miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32880_rno-mir-361:mirbase
Length = 70
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 gaagcttatcagaatctccaggggtacttagtatttgaaaagtcccccaggtgtgattct 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gaagcttatcagaatctccaggggtacttattatttgaaaagtcccccaggtgtgattct 60
Query: 61 gatttgtttc 70
|||| |||||
Sbjct: 61 gattcgtttc 70
>33334_bta-mir-361:mirbase
Length = 71
Score = 97.6 bits (49), Expect = 9e-22
Identities = 62/65 (95%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagtatttg-aaaagtcccccaggtgtgattctg 61
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattctg 62
Query: 62 atttg 66
|||||
Sbjct: 63 atttg 67
>34068_ssc-mir-361:mirbase
Length = 80
Score = 97.6 bits (49), Expect = 9e-22
Identities = 62/65 (95%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagtatttg-aaaagtcccccaggtgtgattctg 61
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattctg 62
Query: 62 atttg 66
|||||
Sbjct: 63 atttg 67
>34069_ssc-mir-361:mirbase
Length = 80
Score = 97.6 bits (49), Expect = 9e-22
Identities = 62/65 (95%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagtatttg-aaaagtcccccaggtgtgattctg 61
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattctg 62
Query: 62 atttg 66
|||||
Sbjct: 63 atttg 67
>26811_cfa-mir-361:mirbase
Length = 63
Score = 91.7 bits (46), Expect = 6e-20
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 ttatcagaatctccaggggtacttagtatttgaaaa-gtcccccaggtgtgattctgatt 64
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 1 ttatcagaatctccaggggtacttaaaatttgaaaaagtcccccaggtgtgattctgatt 60
Query: 65 tg 66
||
Sbjct: 61 tg 62
>27859_mml-mir-361:mirbase
Length = 72
Score = 77.8 bits (39), Expect = 9e-16
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagta--tttgaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatttg 66
||||||
Sbjct: 63 gatttg 68
>27860_mml-mir-361:mirbase
Length = 72
Score = 77.8 bits (39), Expect = 9e-16
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagta--tttgaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatttg 66
||||||
Sbjct: 63 gatttg 68
>28596_hsa-mir-361:mirbase
Length = 72
Score = 77.8 bits (39), Expect = 9e-16
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagta--tttgaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatttg 66
||||||
Sbjct: 63 gatttg 68
>28597_hsa-mir-361:mirbase
Length = 72
Score = 77.8 bits (39), Expect = 9e-16
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagta--tttgaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatttg 66
||||||
Sbjct: 63 gatttg 68
>30340_ptr-mir-361:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 9e-16
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagta--tttgaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatttg 66
||||||
Sbjct: 63 gatttg 68
>30963_ppy-mir-361:mirbase
Length = 72
Score = 77.8 bits (39), Expect = 9e-16
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagta--tttgaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatttg 66
||||||
Sbjct: 63 gatttg 68
>30964_ppy-mir-361:mirbase
Length = 72
Score = 77.8 bits (39), Expect = 9e-16
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagta--tttgaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatttg 66
||||||
Sbjct: 63 gatttg 68
>27141_eca-mir-361:mirbase
Length = 71
Score = 73.8 bits (37), Expect = 1e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagta-tttgaaaagtcccccaggtgtgattctg 61
|||||||||||||||||||||||||| | | ||| |||||||||||||| |||||||||
Sbjct: 3 agcttatcagaatctccaggggtactgataattttaaaaagtcccccaggcgtgattctg 62
Query: 62 atttg 66
|||||
Sbjct: 63 atttg 67
>27142_eca-mir-361:mirbase
Length = 71
Score = 73.8 bits (37), Expect = 1e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttagta-tttgaaaagtcccccaggtgtgattctg 61
|||||||||||||||||||||||||| | | ||| |||||||||||||| |||||||||
Sbjct: 3 agcttatcagaatctccaggggtactgataattttaaaaagtcccccaggcgtgattctg 62
Query: 62 atttg 66
|||||
Sbjct: 63 atttg 67
