miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32040_mmu-mir-369:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
Query: 61 ttgatcttttctcagtatc 79
|||||||||||||||||||
Sbjct: 61 ttgatcttttctcagtatc 79
>34075_ssc-mir-369:mirbase
Length = 149
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 95
Query: 61 ttgatcttttctcagtatc 79
|||||||||||||||||||
Sbjct: 96 ttgatcttttctcagtatc 114
Score = 71.9 bits (36), Expect = 6e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 40 ctgacttcgaataatacatggttgatcttttctcag 75
||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctgacttcgaataatacatggttgatcttttctcag 149
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 ttgaagggagatcgaccgtgttatattcgctt 37
||||||||||||||||||||||||||||||||
Sbjct: 1 ttgaagggagatcgaccgtgttatattcgctt 32
>32884_rno-mir-369:mirbase
Length = 79
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggtacttgaagggagatcgaccgtgttatattcgcttagctgacttcgaataatacatgg 60
Query: 61 ttgatcttttctcagtatc 79
|||||||||||||||||||
Sbjct: 61 ttgatcttttctcagtatc 79
>32885_rno-mir-369:mirbase
Length = 79
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggtacttgaagggagatcgaccgtgttatattcgcttagctgacttcgaataatacatgg 60
Query: 61 ttgatcttttctcagtatc 79
|||||||||||||||||||
Sbjct: 61 ttgatcttttctcagtatc 79
>33072_rno-mir-3578:mirbase
Length = 117
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Minus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 96 ggtacttgaagggagatcgaccgtgttatattcgcttagctgacttcgaataatacatgg 37
Query: 61 ttgatcttttctcagtatc 79
|||||||||||||||||||
Sbjct: 36 ttgatcttttctcagtatc 18
>33813_oar-mir-369:mirbase
Length = 107
Score = 125 bits (63), Expect = 5e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 13 ggtacctgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatgg 72
Query: 61 ttgatcttttctcagtatc 79
|||||||||||||||||||
Sbjct: 73 ttgatcttttctcagtatc 91
>33814_oar-mir-369:mirbase
Length = 107
Score = 125 bits (63), Expect = 5e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 1 ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 13 ggtacctgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatgg 72
Query: 61 ttgatcttttctcagtatc 79
|||||||||||||||||||
Sbjct: 73 ttgatcttttctcagtatc 91
>27867_mml-mir-369:mirbase
Length = 70
Score = 115 bits (58), Expect = 5e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 6 ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60
Query: 66 cttttctcag 75
||||||||||
Sbjct: 61 cttttctcag 70
>27868_mml-mir-369:mirbase
Length = 70
Score = 115 bits (58), Expect = 5e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 6 ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60
Query: 66 cttttctcag 75
||||||||||
Sbjct: 61 cttttctcag 70
>28604_hsa-mir-369:mirbase
Length = 70
Score = 115 bits (58), Expect = 5e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 6 ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60
Query: 66 cttttctcag 75
||||||||||
Sbjct: 61 cttttctcag 70
>28605_hsa-mir-369:mirbase
Length = 70
Score = 115 bits (58), Expect = 5e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 6 ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60
Query: 66 cttttctcag 75
||||||||||
Sbjct: 61 cttttctcag 70
>30971_ppy-mir-369:mirbase
Length = 70
Score = 115 bits (58), Expect = 5e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 6 ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60
Query: 66 cttttctcag 75
||||||||||
Sbjct: 61 cttttctcag 70
>30972_ppy-mir-369:mirbase
Length = 70
Score = 115 bits (58), Expect = 5e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 6 ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60
Query: 66 cttttctcag 75
||||||||||
Sbjct: 61 cttttctcag 70
>30345_ptr-mir-369:mirbase
Length = 69
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 7 tgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgatc 66
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgatc 60
Query: 67 ttttctcag 75
|||||||||
Sbjct: 61 ttttctcag 69
>33342_bta-mir-369:mirbase
Length = 69
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 7 tgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgatc 66
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgatc 60
Query: 67 ttttctcag 75
|||||||||
Sbjct: 61 ttttctcag 69
>33343_bta-mir-369:mirbase
Length = 69
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 7 tgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgatc 66
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgatc 60
Query: 67 ttttctcag 75
|||||||||
Sbjct: 61 ttttctcag 69
>27150_eca-mir-369:mirbase
Length = 70
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 6 ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 1 ttgaagggagatcgaccgtgtcatattcgctttattgacttcgaataatacatggttgat 60
Query: 66 cttttctc 73
||||||||
Sbjct: 61 cttttctc 68
>27149_eca-mir-369:mirbase
Length = 70
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 6 ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 1 ttgaagggagatcgaccgtgtcatattcgctttattgacttcgaataatacatggttgat 60
Query: 66 cttttctc 73
||||||||
Sbjct: 61 cttttctc 68
>26817_cfa-mir-369:mirbase
Length = 56
Score = 73.8 bits (37), Expect = 2e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 17 tcgaccgtgttatattcgcttggctgacttcgaataatacatggttgatcttt 69
||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 4 tcgaccgtgttatattcgctttattgacttcgaataatacatggttggtcttt 56
