miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32039_mmu-mir-369:mirbase
          Length = 79

 Score =  157 bits (79), Expect = 1e-39
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60

                             
Query: 61 ttgatcttttctcagtatc 79
          |||||||||||||||||||
Sbjct: 61 ttgatcttttctcagtatc 79




>34075_ssc-mir-369:mirbase
          Length = 149

 Score =  157 bits (79), Expect = 1e-39
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36  ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 95

                              
Query: 61  ttgatcttttctcagtatc 79
           |||||||||||||||||||
Sbjct: 96  ttgatcttttctcagtatc 114



 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 40  ctgacttcgaataatacatggttgatcttttctcag 75
           ||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctgacttcgaataatacatggttgatcttttctcag 149



 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 6  ttgaagggagatcgaccgtgttatattcgctt 37
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ttgaagggagatcgaccgtgttatattcgctt 32




>32884_rno-mir-369:mirbase
          Length = 79

 Score =  149 bits (75), Expect = 3e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1  ggtacttgaagggagatcgaccgtgttatattcgcttagctgacttcgaataatacatgg 60

                             
Query: 61 ttgatcttttctcagtatc 79
          |||||||||||||||||||
Sbjct: 61 ttgatcttttctcagtatc 79




>32885_rno-mir-369:mirbase
          Length = 79

 Score =  149 bits (75), Expect = 3e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1  ggtacttgaagggagatcgaccgtgttatattcgcttagctgacttcgaataatacatgg 60

                             
Query: 61 ttgatcttttctcagtatc 79
          |||||||||||||||||||
Sbjct: 61 ttgatcttttctcagtatc 79




>33072_rno-mir-3578:mirbase
          Length = 117

 Score =  149 bits (75), Expect = 3e-37
 Identities = 78/79 (98%)
 Strand = Plus / Minus

                                                                      
Query: 1  ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 96 ggtacttgaagggagatcgaccgtgttatattcgcttagctgacttcgaataatacatgg 37

                             
Query: 61 ttgatcttttctcagtatc 79
          |||||||||||||||||||
Sbjct: 36 ttgatcttttctcagtatc 18




>33813_oar-mir-369:mirbase
          Length = 107

 Score =  125 bits (63), Expect = 5e-30
 Identities = 75/79 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
          ||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 13 ggtacctgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatgg 72

                             
Query: 61 ttgatcttttctcagtatc 79
          |||||||||||||||||||
Sbjct: 73 ttgatcttttctcagtatc 91




>33814_oar-mir-369:mirbase
          Length = 107

 Score =  125 bits (63), Expect = 5e-30
 Identities = 75/79 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtacttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatgg 60
          ||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 13 ggtacctgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatgg 72

                             
Query: 61 ttgatcttttctcagtatc 79
          |||||||||||||||||||
Sbjct: 73 ttgatcttttctcagtatc 91




>27867_mml-mir-369:mirbase
          Length = 70

 Score =  115 bits (58), Expect = 5e-27
 Identities = 67/70 (95%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
          ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 1  ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60

                    
Query: 66 cttttctcag 75
          ||||||||||
Sbjct: 61 cttttctcag 70




>27868_mml-mir-369:mirbase
          Length = 70

 Score =  115 bits (58), Expect = 5e-27
 Identities = 67/70 (95%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
          ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 1  ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60

                    
Query: 66 cttttctcag 75
          ||||||||||
Sbjct: 61 cttttctcag 70




>28604_hsa-mir-369:mirbase
          Length = 70

 Score =  115 bits (58), Expect = 5e-27
 Identities = 67/70 (95%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
          ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 1  ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60

                    
Query: 66 cttttctcag 75
          ||||||||||
Sbjct: 61 cttttctcag 70




>28605_hsa-mir-369:mirbase
          Length = 70

 Score =  115 bits (58), Expect = 5e-27
 Identities = 67/70 (95%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
          ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 1  ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60

                    
Query: 66 cttttctcag 75
          ||||||||||
Sbjct: 61 cttttctcag 70




>30971_ppy-mir-369:mirbase
          Length = 70

 Score =  115 bits (58), Expect = 5e-27
 Identities = 67/70 (95%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
          ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 1  ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60

                    
Query: 66 cttttctcag 75
          ||||||||||
Sbjct: 61 cttttctcag 70




>30972_ppy-mir-369:mirbase
          Length = 70

 Score =  115 bits (58), Expect = 5e-27
 Identities = 67/70 (95%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
          ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 1  ttgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgat 60

                    
Query: 66 cttttctcag 75
          ||||||||||
Sbjct: 61 cttttctcag 70




>30345_ptr-mir-369:mirbase
          Length = 69

 Score =  113 bits (57), Expect = 2e-26
 Identities = 66/69 (95%)
 Strand = Plus / Plus

                                                                      
Query: 7  tgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgatc 66
          |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 1  tgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgatc 60

                   
Query: 67 ttttctcag 75
          |||||||||
Sbjct: 61 ttttctcag 69




>33342_bta-mir-369:mirbase
          Length = 69

 Score =  113 bits (57), Expect = 2e-26
 Identities = 66/69 (95%)
 Strand = Plus / Plus

                                                                      
Query: 7  tgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgatc 66
          |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 1  tgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgatc 60

                   
Query: 67 ttttctcag 75
          |||||||||
Sbjct: 61 ttttctcag 69




>33343_bta-mir-369:mirbase
          Length = 69

 Score =  113 bits (57), Expect = 2e-26
 Identities = 66/69 (95%)
 Strand = Plus / Plus

                                                                      
Query: 7  tgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgatc 66
          |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 1  tgaagggagatcgaccgtgttatattcgctttattgacttcgaataatacatggttgatc 60

                   
Query: 67 ttttctcag 75
          |||||||||
Sbjct: 61 ttttctcag 69




>27150_eca-mir-369:mirbase
          Length = 70

 Score =  103 bits (52), Expect = 2e-23
 Identities = 64/68 (94%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
          ||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||
Sbjct: 1  ttgaagggagatcgaccgtgtcatattcgctttattgacttcgaataatacatggttgat 60

                  
Query: 66 cttttctc 73
          ||||||||
Sbjct: 61 cttttctc 68




>27149_eca-mir-369:mirbase
          Length = 70

 Score =  103 bits (52), Expect = 2e-23
 Identities = 64/68 (94%)
 Strand = Plus / Plus

                                                                      
Query: 6  ttgaagggagatcgaccgtgttatattcgcttggctgacttcgaataatacatggttgat 65
          ||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||
Sbjct: 1  ttgaagggagatcgaccgtgtcatattcgctttattgacttcgaataatacatggttgat 60

                  
Query: 66 cttttctc 73
          ||||||||
Sbjct: 61 cttttctc 68




>26817_cfa-mir-369:mirbase
          Length = 56

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                               
Query: 17 tcgaccgtgttatattcgcttggctgacttcgaataatacatggttgatcttt 69
          |||||||||||||||||||||   ||||||||||||||||||||||| |||||
Sbjct: 4  tcgaccgtgttatattcgctttattgacttcgaataatacatggttggtcttt 56