miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33346_bta-mir-374b:mirbase
Length = 95
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 1 gaagaaatcctactcgggtggatataatacaacctgctaagtgttctagcacttagcagg 60
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 1 gaagaaatcctactcggatggatataatacaacctgctaagtgtcctagcacttatcagg 60
Query: 61 ttgtattatcattgtccgaggttatggctctcgtc 95
|||||||||||||||||| | |||||||||||||
Sbjct: 61 ttgtattatcattgtccgtgtctatggctctcgtc 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 69 ataatacaacctgataagtgctaggacacttagcaggttgtattat 24
>27877_mml-mir-374b:mirbase
Length = 72
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 12 actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 71
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
Query: 72 ttgtccg 78
|||||||
Sbjct: 61 ttgtccg 67
Score = 52.0 bits (26), Expect = 7e-08
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
|||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 58 ataatacaacctgctaagtgctaggacacttagcaggttgtattat 13
>28614_hsa-mir-374b:mirbase
Length = 72
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 12 actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 71
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
Query: 72 ttgtccg 78
|||||||
Sbjct: 61 ttgtccg 67
Score = 52.0 bits (26), Expect = 7e-08
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
|||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 58 ataatacaacctgctaagtgctaggacacttagcaggttgtattat 13
>28615_hsa-mir-374c:mirbase
Length = 70
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Minus
Query: 12 actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 71
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 70 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 11
Query: 72 ttgtccg 78
|||||||
Sbjct: 10 ttgtccg 4
Score = 52.0 bits (26), Expect = 7e-08
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
|||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 13 ataatacaacctgctaagtgctaggacacttagcaggttgtattat 58
>30351_ptr-mir-374b:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 12 actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 71
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
Query: 72 ttgtccg 78
|||||||
Sbjct: 61 ttgtccg 67
Score = 52.0 bits (26), Expect = 7e-08
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
|||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 58 ataatacaacctgctaagtgctaggacacttagcaggttgtattat 13
>32887_rno-mir-374:mirbase
Length = 68
Score = 111 bits (56), Expect = 9e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 13 ctcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatcat 72
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
Query: 73 tgtccgag 80
||||||||
Sbjct: 61 tgtccgag 68
Score = 52.0 bits (26), Expect = 7e-08
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
|||||||||| ||||||||| | | ||||||||||||||||||||
Sbjct: 57 ataatacaacgtgctaagtgctagaacacttagcaggttgtattat 12
>34077_ssc-mir-374b:mirbase
Length = 80
Score = 111 bits (56), Expect = 9e-26
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 14 tcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatcatt 73
|||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 1 tcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 60
Query: 74 gtccgaggttatggctctcg 93
||||| | |||||||||||
Sbjct: 61 gtccgtgtctatggctctcg 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 56 ataatacaacctgataagtgctaggacacttagcaggttgtattat 11
>34078_ssc-mir-374b:mirbase
Length = 80
Score = 111 bits (56), Expect = 9e-26
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 14 tcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatcatt 73
|||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 1 tcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 60
Query: 74 gtccgaggttatggctctcg 93
||||| | |||||||||||
Sbjct: 61 gtccgtgtctatggctctcg 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 56 ataatacaacctgataagtgctaggacacttagcaggttgtattat 11
>27155_eca-mir-374b:mirbase
Length = 72
Score = 109 bits (55), Expect = 4e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 12 actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 71
|||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1 actcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatca 60
Query: 72 ttgtccg 78
|||||||
Sbjct: 61 ttgtccg 67
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 58 ataatacaacctgataagtgctaggacacttagcaggttgtattat 13
>32043_mmu-mir-374c:mirbase
Length = 49
Score = 97.6 bits (49), Expect = 1e-21
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 22 atataatacaacctgctaagtgttctagcacttagcaggttgtattatc 70
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 atataatacaacctgctaagtgttctagcacttagcaggttgtattatc 1
Score = 60.0 bits (30), Expect = 3e-10
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
|||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 2 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 47
>26821_cfa-mir-374b:mirbase
Length = 52
Score = 87.7 bits (44), Expect = 1e-18
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 22 atataatacaacctgctaagtgttctagcacttagcaggttgtattatcatt 73
||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 1 atataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 52
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 48 ataatacaacctgataagtgctaggacacttagcaggttgtattat 3
>26820_cfa-mir-374a:mirbase
Length = 52
Score = 65.9 bits (33), Expect = 5e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgttctagcacttagcaggttgtatt 67
|||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 2 tataatacaacctgataagtgttgtagcacttaccaggttgtatt 46
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 26 aatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||||||| |||||| | | |||||| |||||||||||||
Sbjct: 46 aatacaacctggtaagtgctacaacacttatcaggttgtattat 3
>27154_eca-mir-374a:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 76
|||||||||||||| |||||||| |||||||| ||||||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtc 66
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 26 aatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||||||| |||||| | || |||||| |||||||||||||
Sbjct: 57 aatacaacctgataagtgctgtaacacttatcaggttgtattat 14
>28613_hsa-mir-374a:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 76
|||||||||||||| |||||||| ||||||||| ||| ||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtc 66
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 26 aatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||| ||| |||||| | || |||||| |||||||||||||
Sbjct: 57 aatacaatctgataagtgctataacacttatcaggttgtattat 14
>30350_ptr-mir-374a:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 76
|||||||||||||| |||||||| ||||||||| ||| ||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtc 66
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 26 aatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||| ||| |||||| | || |||||| |||||||||||||
Sbjct: 57 aatacaatctgataagtgctataacacttatcaggttgtattat 14
>30978_ppy-mir-374a:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 76
|||||||||||||| |||||||| ||||||||| ||| ||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttgtagcacttatcagattgtattgtaattgtc 66
>33345_bta-mir-374a:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 76
|||||||||||||| |||||||| |||||||| ||||||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtc 66
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 26 aatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||||||| |||||| | || |||||| |||||||||||||
Sbjct: 57 aatacaacctgataagtgctgtaacacttatcaggttgtattat 14
>34076_ssc-mir-374a:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 76
|||||||||||||| |||||||| |||||||| ||||||||||| | ||||||
Sbjct: 11 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtc 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 26 aatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||||||| |||||| | || |||||| |||||||||||||
Sbjct: 55 aatacaacctgataagtgctgtaacacttatcaggttgtattat 12
>27876_mml-mir-374a:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgttctagcacttagcaggttgtattatcattgtc 76
|||||||||||||| |||||||| |||||||| ||| ||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttacagcacttatcagattgtattgtaattgtc 66
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 26 aatacaacctgctaagtgttctagcacttagcaggttgtattat 69
||||||| ||| |||||| | || |||||| |||||||||||||
Sbjct: 57 aatacaatctgataagtgctgtaacacttatcaggttgtattat 14
