miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32892_rno-mir-376c:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 2 ttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagag 61
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
Query: 62 gaaatttcacgttttcagtgtcaa 85
||||||||||||||||||||||||
Sbjct: 61 gaaatttcacgttttcagtgtcaa 84
>33350_bta-mir-376c:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 1 tttggtatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacataga 60
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||||| |||||||||||| |||||
Sbjct: 61 ggaaattccacgttttcagtatcaaa 86
>26827_cfa-mir-376c:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||
Sbjct: 1 tttggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacataga 60
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||||| |||||||||||| |||||
Sbjct: 61 ggaaattccacgttttcagtatcaaa 86
>34081_ssc-mir-376c:mirbase
Length = 78
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 6 tatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagaggaaa 65
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 1 tatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagaggaaa 60
Query: 66 tttcacgttttcagt 80
|| ||||||||||||
Sbjct: 61 ttccacgttttcagt 75
>33821_oar-mir-376c:mirbase
Length = 105
Score = 115 bits (58), Expect = 5e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
|||||||||||||||||||||||||| |||||||||||| | ||| || |||||||||||
Sbjct: 8 tttggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacataga 67
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||||| |||||||||||| |||||
Sbjct: 68 ggaaattccacgttttcagtatcaaa 93
>33822_oar-mir-376c:mirbase
Length = 105
Score = 115 bits (58), Expect = 5e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
|||||||||||||||||||||||||| |||||||||||| | ||| || |||||||||||
Sbjct: 8 tttggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacataga 67
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||||| |||||||||||| |||||
Sbjct: 68 ggaaattccacgttttcagtatcaaa 93
>34080_ssc-mir-376b:mirbase
Length = 78
Score = 109 bits (55), Expect = 3e-25
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 6 tatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagaggaaa 65
|||||||||||||| ||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 1 tatttaaaaggtggctattccttctatgtttatgttatttgtggttaaacatagaggaaa 60
Query: 66 tttcacgttttcagt 80
|| ||||||||||||
Sbjct: 61 ttccacgttttcagt 75
>27158_eca-mir-376c:mirbase
Length = 66
Score = 91.7 bits (46), Expect = 8e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatgtttatgctttttgtgattaaacatagaggaaatttca 70
||||||||||||||||||||||||||||| | ||| || |||||||||||||||||| ||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattcca 60
Query: 71 cgtttt 76
||||||
Sbjct: 61 cgtttt 66
>27882_mml-mir-376c:mirbase
Length = 66
Score = 91.7 bits (46), Expect = 8e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatgtttatgctttttgtgattaaacatagaggaaatttca 70
||||||||||||||||||||||||||||| | ||| || |||||||||||||||||| ||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcca 60
Query: 71 cgtttt 76
||||||
Sbjct: 61 cgtttt 66
>28620_hsa-mir-376c:mirbase
Length = 66
Score = 91.7 bits (46), Expect = 8e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatgtttatgctttttgtgattaaacatagaggaaatttca 70
||||||||||||||||||||||||||||| | ||| || |||||||||||||||||| ||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcca 60
Query: 71 cgtttt 76
||||||
Sbjct: 61 cgtttt 66
>30983_ppy-mir-376c:mirbase
Length = 66
Score = 91.7 bits (46), Expect = 8e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 11 aaaaggtggatattccttctatgtttatgctttttgtgattaaacatagaggaaatttca 70
||||||||||||||||||||||||||||| | ||| || |||||||||||||||||| ||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcca 60
Query: 71 cgtttt 76
||||||
Sbjct: 61 cgtttt 66
>30356_ptr-mir-376c:mirbase
Length = 65
Score = 89.7 bits (45), Expect = 3e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 12 aaaggtggatattccttctatgtttatgctttttgtgattaaacatagaggaaatttcac 71
|||||||||||||||||||||||||||| | ||| || |||||||||||||||||| |||
Sbjct: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 60
Query: 72 gtttt 76
|||||
Sbjct: 61 gtttt 65
>33823_oar-mir-376d:mirbase
Length = 110
Score = 75.8 bits (38), Expect = 4e-15
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
||||||||||||||||| ||| ||||||||||| ||| | ||| |||||||| ||||||
Sbjct: 14 tttggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcataga 73
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||| | ||| |||||||| |||||
Sbjct: 74 ggaaaatccacattttcagtatcaaa 99
>26826_cfa-mir-376b:mirbase
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgttta 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 9 tttggtatttaaaaggtggatattccttctatgttta 45
>33349_bta-mir-376b:mirbase
Length = 93
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgttta 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 4 tttggtatttaaaaggtggatattccttctatgttta 40
>33819_oar-mir-376b:mirbase
Length = 106
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgttta 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 9 tttggtatttaaaaggtggatattccttctatgttta 45
>33820_oar-mir-376b:mirbase
Length = 106
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgttta 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 9 tttggtatttaaaaggtggatattccttctatgttta 45
>27157_eca-mir-376b:mirbase
Length = 82
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 3 tggtatttaaaaggtggatattccttctatgttta 37
|||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtatttaaaaggtggatattccttctatgttta 35
>27881_mml-mir-376b:mirbase
Length = 100
Score = 67.9 bits (34), Expect = 1e-12
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
|||||||||||||| |||||||||||||||||||||| | || || |||| ||||||
Sbjct: 10 tttggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcataga 69
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||| | || ||||||||| |||||
Sbjct: 70 ggaaaatccatgttttcagtatcaaa 95
>28619_hsa-mir-376b:mirbase
Length = 100
Score = 67.9 bits (34), Expect = 1e-12
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
|||||||||||||| |||||||||||||||||||||| | || || |||| ||||||
Sbjct: 10 tttggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcataga 69
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||| | || ||||||||| |||||
Sbjct: 70 ggaaaatccatgttttcagtatcaaa 95
>30355_ptr-mir-376b:mirbase
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
|||||||||||||| |||||||||||||||||||||| | || || |||| ||||||
Sbjct: 9 tttggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcataga 68
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||| | || ||||||||| |||||
Sbjct: 69 ggaaaatccatgttttcagtatcaaa 94
>30982_ppy-mir-376b:mirbase
Length = 100
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgttta 37
|||||||||||||| ||||||||||||||||||||||
Sbjct: 10 tttggtatttaaaacgtggatattccttctatgttta 46
>32890_rno-mir-376b:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatg 33
|||||||||||||||||||||||||||||||||
Sbjct: 1 tttggtatttaaaaggtggatattccttctatg 33
>32891_rno-mir-376b:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatg 33
|||||||||||||||||||||||||||||||||
Sbjct: 1 tttggtatttaaaaggtggatattccttctatg 33
>32046_mmu-mir-376b:mirbase
Length = 82
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tggtatttaaaaggtggatattccttctatg 33
|||||||||||||||||||||||||||||||
Sbjct: 1 tggtatttaaaaggtggatattccttctatg 31
>33351_bta-mir-376d:mirbase
Length = 82
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagagga 63
|||||||||||||| ||| ||||||||||| ||| | ||| |||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
Query: 64 aa 65
||
Sbjct: 61 aa 62
>27880_mml-mir-376a-2:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagagga 63
|||||||||||||| ||| ||||||||||| ||| | ||| || |||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
Query: 64 aatttcacgttttcagt 80
|| | ||||||||||||
Sbjct: 61 aaatccacgttttcagt 77
>28618_hsa-mir-376a-2:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagagga 63
|||||||||||||| ||| ||||||||||| ||| | ||| || |||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
Query: 64 aatttcacgttttcagt 80
|| | ||||||||||||
Sbjct: 61 aaatccacgttttcagt 77
>30981_ppy-mir-376a-2:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagagga 63
|||||||||||||| ||| ||||||||||| ||| | ||| || |||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
Query: 64 aatttcacgttttcagt 80
|| | ||||||||||||
Sbjct: 61 aaatccacgttttcagt 77
>33824_oar-mir-376e:mirbase
Length = 106
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgttta 37
|||| |||| |||||||||||||||||||||||||||
Sbjct: 9 tttgatattcaaaaggtggatattccttctatgttta 45
>33825_oar-mir-376e:mirbase
Length = 106
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgttta 37
|||| |||| |||||||||||||||||||||||||||
Sbjct: 9 tttgatattcaaaaggtggatattccttctatgttta 45
>30354_ptr-mir-376a-2:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 5 gtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagaggaa 64
||||||||||||| ||| ||||||||||| ||| | ||| || |||| ||||||||||
Sbjct: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
Query: 65 atttcacgttttcagt 80
| | ||||||||||||
Sbjct: 61 aatccacgttttcagt 76
>33348_bta-mir-376a:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 6e-08
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
||||||||||||||||| ||| |||||||||| || | ||| |||||| ||||||
Sbjct: 9 tttggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcataga 68
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||| | |||||||||||| |||||
Sbjct: 69 ggaaaatccacgttttcagtatcaaa 94
>33817_oar-mir-376a:mirbase
Length = 103
Score = 52.0 bits (26), Expect = 6e-08
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
||||||||||||||||| ||| |||||||||| || | ||| |||||| ||||||
Sbjct: 7 tttggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcataga 66
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||| | |||||||||||| |||||
Sbjct: 67 ggaaaatccacgttttcagtatcaaa 92
>33818_oar-mir-376a:mirbase
Length = 103
Score = 52.0 bits (26), Expect = 6e-08
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 1 tttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacataga 60
||||||||||||||||| ||| |||||||||| || | ||| |||||| ||||||
Sbjct: 7 tttggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcataga 66
Query: 61 ggaaatttcacgttttcagtgtcaaa 86
||||| | |||||||||||| |||||
Sbjct: 67 ggaaaatccacgttttcagtatcaaa 92
>34079_ssc-mir-376a:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 4 ggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagagga 63
|||||||||||||| ||| |||||||||| || | ||| | ||||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttattattaatcatagagga 60
Query: 64 aatttcacgttttcagt 80
|| | ||||||||||||
Sbjct: 61 aaatccacgttttcagt 77
>26825_cfa-mir-376a-3:mirbase
Length = 59
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15 ggtggatattccttctatgttta 37
||||||| |||||||||||||||
Sbjct: 1 ggtggatgttccttctatgttta 23
>27156_eca-mir-376a:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 47 tgattaaacatagaggaaatttcacgttttc 77
||||||| ||||||||||| | |||||||||
Sbjct: 38 tgattaatcatagaggaaaatccacgttttc 68
>27879_mml-mir-376a-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 47 tgattaaacatagaggaaatttcacgttttc 77
||||||| ||||||||||| | |||||||||
Sbjct: 38 tgattaatcatagaggaaaatccacgttttc 68
>28617_hsa-mir-376a-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 47 tgattaaacatagaggaaatttcacgttttc 77
||||||| ||||||||||| | |||||||||
Sbjct: 38 tgattaatcatagaggaaaatccacgttttc 68
>30353_ptr-mir-376a-1:mirbase
Length = 67
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 47 tgattaaacatagaggaaatttcacgttttc 77
||||||| ||||||||||| | |||||||||
Sbjct: 37 tgattaatcatagaggaaaatccacgttttc 67
>30980_ppy-mir-376a-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 47 tgattaaacatagaggaaatttcacgttttc 77
||||||| ||||||||||| | |||||||||
Sbjct: 38 tgattaatcatagaggaaaatccacgttttc 68
