• Home
• Browse miRNAs
• Deep-seq predictions
• Mirtrons
• miRNA genes
• Degradomes
• Download
• Upload
• Contact

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32053_mmu-mir-380:mirbase
          Length = 61

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60

           
Query: 61 t 61
          |
Sbjct: 61 t 61

>32896_rno-mir-380:mirbase
          Length = 77

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 67

           
Query: 61 t 61
          |
Sbjct: 68 t 68

>33073_rno-mir-3579:mirbase
          Length = 113

 Score =  121 bits (61), Expect = 5e-29
 Identities = 61/61 (100%)
 Strand = Plus / Minus

                                                                      
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 30

           
Query: 61 t 61
          |
Sbjct: 29 t 29

>28633_hsa-mir-380:mirbase
          Length = 61

 Score = 97.6 bits (49), Expect = 8e-22
 Identities = 58/61 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
          ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||
Sbjct: 1  aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60

           
Query: 61 t 61
          |
Sbjct: 61 t 61

>30360_ptr-mir-380:mirbase
          Length = 60

 Score = 95.6 bits (48), Expect = 3e-21
 Identities = 57/60 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  agatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatctt 61
          |||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||
Sbjct: 1  agatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatctt 60

>27886_mml-mir-380:mirbase
          Length = 61

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
          ||||||||||||||||||||||||||||  ||||||||||||||| |||||||||| |||
Sbjct: 1  aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacgtct 60

           
Query: 61 t 61
          |
Sbjct: 61 t 61

>30987_ppy-mir-380:mirbase
          Length = 60

 Score = 87.7 bits (44), Expect = 8e-19
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                  
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccac 56
          ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||
Sbjct: 1  aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccac 56

>26831_cfa-mir-380:mirbase
          Length = 57

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                               
Query: 4  atggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccac 56
          |||||||||||||||||||||||||  ||| ||||||||||| ||||||||||
Sbjct: 1  atggttgaccatagaacatgcgctagctctatgtcgtatgtaatatggtccac 53

>33356_bta-mir-380:mirbase
          Length = 61

 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
          |||||||||||||||||||||||||||   ||| ||||||||||| | |||||||| |||
Sbjct: 1  aagatggttgaccatagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 60

           
Query: 61 t 61
          |
Sbjct: 61 t 61

>33357_bta-mir-380:mirbase
          Length = 61

 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
          |||||||||||||||||||||||||||   ||| ||||||||||| | |||||||| |||
Sbjct: 1  aagatggttgaccatagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 60

           
Query: 61 t 61
          |
Sbjct: 61 t 61

>33830_oar-mir-380:mirbase
          Length = 103

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
          |||||||||||||| ||||||||||||   ||| ||||||||||| | |||||||| |||
Sbjct: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79

           
Query: 61 t 61
          |
Sbjct: 80 t 80

>33831_oar-mir-380:mirbase
          Length = 103

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
          |||||||||||||| ||||||||||||   ||| ||||||||||| | |||||||| |||
Sbjct: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79

           
Query: 61 t 61
          |
Sbjct: 80 t 80

>27162_eca-mir-380:mirbase
          Length = 61

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
          |||| ||||||||||||| ||||||||   |||  |||||||||| |||||||||| |||
Sbjct: 1  aagacggttgaccatagagcatgcgctgtctctaggtcgtatgtaatatggtccacgtct 60

           
Query: 61 t 61
          |
Sbjct: 61 t 61