miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32063_mmu-mir-412:mirbase
          Length = 80

 Score =  159 bits (80), Expect = 4e-40
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gggtatgggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctgg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gggtatgggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctgg 60

                              
Query: 61 tccactagccgtcggtgccc 80
          ||||||||||||||||||||
Sbjct: 61 tccactagccgtcggtgccc 80




>32906_rno-mir-412:mirbase
          Length = 70

 Score =  139 bits (70), Expect = 3e-34
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                      
Query: 7  gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 60

                    
Query: 67 agccgtcggt 76
          ||||||||||
Sbjct: 61 agccgtcggt 70




>27895_mml-mir-412:mirbase
          Length = 91

 Score =  117 bits (59), Expect = 1e-27
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                      
Query: 7  gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
          |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 70

                 
Query: 67 agccgtc 73
          |||||||
Sbjct: 71 agccgtc 77




>28642_hsa-mir-412:mirbase
          Length = 91

 Score =  117 bits (59), Expect = 1e-27
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                      
Query: 7  gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
          |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 70

                 
Query: 67 agccgtc 73
          |||||||
Sbjct: 71 agccgtc 77




>30367_ptr-mir-412:mirbase
          Length = 90

 Score =  117 bits (59), Expect = 1e-27
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                      
Query: 7  gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
          |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 69

                 
Query: 67 agccgtc 73
          |||||||
Sbjct: 70 agccgtc 76




>30996_ppy-mir-412:mirbase
          Length = 91

 Score =  117 bits (59), Expect = 1e-27
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                      
Query: 7  gggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccact 66
          |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccact 70

                 
Query: 67 agccgtc 73
          |||||||
Sbjct: 71 agccgtc 77




>27171_eca-mir-412:mirbase
          Length = 80

 Score =  115 bits (58), Expect = 5e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 12 ggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccactagccg 71
          |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 71

            
Query: 72 tc 73
          ||
Sbjct: 72 tc 73




>33365_bta-mir-412:mirbase
          Length = 90

 Score =  115 bits (58), Expect = 5e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 8  ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
          |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccacta 70

            
Query: 68 gc 69
          ||
Sbjct: 71 gc 72




>33844_oar-mir-412:mirbase
          Length = 124

 Score =  107 bits (54), Expect = 1e-24
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 40  ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccacta 99

             
Query: 68  gc 69
           ||
Sbjct: 100 gc 101




>33845_oar-mir-412:mirbase
          Length = 124

 Score =  107 bits (54), Expect = 1e-24
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 40  ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccacta 99

             
Query: 68  gc 69
           ||
Sbjct: 100 gc 101