miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32075_mmu-mir-448:mirbase
Length = 112
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 acgaggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acgaggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagg 60
Query: 61 gggctggctggttgcatatgtaggatgtcccatctcctggcccacttcgtca 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gggctggctggttgcatatgtaggatgtcccatctcctggcccacttcgtca 112
>32914_rno-mir-448:mirbase
Length = 112
Score = 206 bits (104), Expect = 3e-54
Identities = 107/108 (99%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
Query: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttcgtca 112
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 65 tggctggttgcatatgtaggatgtcccatctcccggcccacttcgtca 112
>28653_hsa-mir-448:mirbase
Length = 111
Score = 174 bits (88), Expect = 9e-45
Identities = 104/108 (96%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagagggggc 63
Query: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttcgtca 112
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 64 tggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 111
>30376_ptr-mir-448:mirbase
Length = 110
Score = 174 bits (88), Expect = 9e-45
Identities = 104/108 (96%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 4 ggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagagggggc 62
Query: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttcgtca 112
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 63 tggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 110
>31007_ppy-mir-448:mirbase
Length = 111
Score = 174 bits (88), Expect = 9e-45
Identities = 104/108 (96%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagagggggc 63
Query: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttcgtca 112
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 64 tggctggttgcatatgtaggatgtcccatctcccagcccacttcgtca 111
>27906_mml-mir-448:mirbase
Length = 111
Score = 167 bits (84), Expect = 2e-42
Identities = 103/108 (95%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctatttcatactaaga-ggggc 63
Query: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttcgtca 112
||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 64 tggctggttgcatatgtaggatgtcccatctcccagcctacttcgtca 111
>27180_eca-mir-448:mirbase
Length = 109
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 6 ggaggttgaacatcctgcatagtgctgccaggaaatccccattttatactaagagggggc 65
Query: 65 tggctggttgcatatgtaggatgtcccatctcc 97
|||||||||||||||||||||||||||||||||
Sbjct: 66 tggctggttgcatatgtaggatgtcccatctcc 98
>26846_cfa-mir-448:mirbase
Length = 110
Score = 153 bits (77), Expect = 3e-38
Identities = 98/104 (94%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctattttatacta--agggggc 62
Query: 65 tggctggttgcatatgtaggatgtcccatctcctggcccacttc 108
||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 63 tggctggttgcatatgtaggatgtcccatctccccgcccacttc 106
>33376_bta-mir-448:mirbase
Length = 111
Score = 153 bits (77), Expect = 3e-38
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaagggggggt 64
Query: 65 tggctggttgcatatgtaggatgtcccatctcc 97
|||||||||||||||||||||||||||||||||
Sbjct: 65 tggctggttgcatatgtaggatgtcccatctcc 97
