miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28655_hsa-mir-449b:mirbase
Length = 97
Score = 77.8 bits (39), Expect = 1e-15
Identities = 67/74 (90%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 13 ggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagccacaactaccctg 71
Query: 66 ccacttccttctgg 79
|||||| |||||||
Sbjct: 72 ccacttgcttctgg 85
>30378_ptr-mir-449b:mirbase
Length = 96
Score = 77.8 bits (39), Expect = 1e-15
Identities = 67/74 (90%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 12 ggtaggcagtgtattgttagctggctgc-ttgggtcaagtcagcagccacaactaccctg 70
Query: 66 ccacttccttctgg 79
|||||| |||||||
Sbjct: 71 ccacttgcttctgg 84
>27908_mml-mir-449b:mirbase
Length = 97
Score = 69.9 bits (35), Expect = 3e-13
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||||||||||| ||| |||| | ||||||||||| ||||||||
Sbjct: 13 ggtaggcagtgtattgttagctggctgc-ttgagtcaagtcagcagccacaactaccctg 71
Query: 66 ccacttccttctgg 79
|||||| |||||||
Sbjct: 72 ccacttgcttctgg 85
>31009_ppy-mir-449b:mirbase
Length = 97
Score = 69.9 bits (35), Expect = 3e-13
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||||||||||| |||| ||| | ||||||||||| ||||||||
Sbjct: 13 ggtaggcagtgtattgttagctggctgctttgg-tcaagtcagcagccacaactaccctg 71
Query: 66 ccacttccttctgg 79
|||||| |||||||
Sbjct: 72 ccacttgcttctgg 85
>33378_bta-mir-449b:mirbase
Length = 98
Score = 69.9 bits (35), Expect = 3e-13
Identities = 65/74 (87%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
|||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 13 ggtaggcagtgtattgttagctggctgctttgggtcaattcagcagccacaactgccctg 72
Query: 66 ccacttccttctgg 79
|||||| |||||||
Sbjct: 73 ccacttgcttctgg 86
>34254_dre-mir-34b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 gtaggcagtgttgttagctg 28
||||||||||||||||||||
Sbjct: 12 gtaggcagtgttgttagctg 31
>24662_bfl-mir-34c:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 12 ggcagtgttgttagctggc 30
|||||||||||||||||||
Sbjct: 18 ggcagtgttgttagctggc 36
