miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32918_rno-mir-450a:mirbase
Length = 91
Score = 119 bits (60), Expect = 4e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 1 gagagatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaa 60
||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 gagagatgcggagctgtttttgcgatgtgttcctaatgtgtgctacaattatattgggaa 60
Query: 61 cattttgcataaatag 76
||||||||||||||||
Sbjct: 61 cattttgcataaatag 76
>27909_mml-mir-450a-1:mirbase
Length = 91
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 5 gatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacatt 64
|||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 5 gatactaaactgtttttgcgatgtgttcctaatatgtactataaatatattgggaacatt 64
Query: 65 ttgcat 70
||||||
Sbjct: 65 ttgcat 70
>28657_hsa-mir-450a-1:mirbase
Length = 91
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 5 gatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacatt 64
|||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 5 gatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacatt 64
Query: 65 ttgcataaatagctttgtgtcaata 89
|||||| |||| ||||| ||||||
Sbjct: 65 ttgcatgtatagttttgtatcaata 89
>30379_ptr-mir-450a-1:mirbase
Length = 90
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 5 gatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacatt 64
|||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 5 gatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaacatt 64
Query: 65 ttgcataaatagctttgtgtcaata 89
|||||| |||| ||||| ||||||
Sbjct: 65 ttgcatgtatagttttgtatcaata 89
>31010_ppy-mir-450a-1:mirbase
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 5 gatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacatt 64
|||||| | ||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct: 5 gatactaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacatt 64
Query: 65 ttgcat 70
||||||
Sbjct: 65 ttgcat 70
>27182_eca-mir-450a:mirbase
Length = 91
Score = 73.8 bits (37), Expect = 2e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 14 ctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcat 70
||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct: 14 ctgtttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcat 70
>27186_eca-mir-451a:mirbase
Length = 89
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
|||||||||||||||||||||| || ||||| | ||||||||||||||||||| ||||
Sbjct: 17 tttttgcgatgtgttcctaatacgtaatataaatgtattgggaacattttgcattcatag 76
Query: 77 ctttgtgtcaata 89
||||| ||||||
Sbjct: 77 ttttgtatcaata 89
>27910_mml-mir-450a-2:mirbase
Length = 100
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
||||||||||||||||||||||||| ||||| | ||||||| ||||||||||| ||||
Sbjct: 22 tttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgcattcatag 81
Query: 77 ctttgtgtcaata 89
||||| ||||||
Sbjct: 82 ttttgtatcaata 94
>28658_hsa-mir-450a-2:mirbase
Length = 100
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
||||||||||||||||||||||||| ||||| | ||||||| ||||||||||| ||||
Sbjct: 22 tttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgcattcatag 81
Query: 77 ctttgtgtcaata 89
||||| ||||||
Sbjct: 82 ttttgtatcaata 94
>30380_ptr-mir-450a-2:mirbase
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
||||||||||||||||||||||||| ||||| | ||||||| ||||||||||| ||||
Sbjct: 22 tttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgcattcatag 81
Query: 77 ctttgtgtcaata 89
||||| ||||||
Sbjct: 82 ttttgtatcaata 94
>33381_bta-mir-450:mirbase
Length = 92
Score = 71.9 bits (36), Expect = 7e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
||||||||||||||||||||||||| | ||| | ||||||||||||||||||| ||||
Sbjct: 21 tttttgcgatgtgttcctaatatgtaatctaaatgtattgggaacattttgcattcatag 80
Query: 77 ctttgtgtcaat 88
||||| |||||
Sbjct: 81 ttttgtatcaat 92
>33382_bta-mir-450-1:mirbase
Length = 82
Score = 67.9 bits (34), Expect = 1e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcat 70
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct: 5 tttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcat 58
>34097_ssc-mir-450a:mirbase
Length = 106
Score = 65.9 bits (33), Expect = 5e-12
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 18 ttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcat 70
||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct: 28 ttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcat 80
>31011_ppy-mir-450a-2:mirbase
Length = 100
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcataaatag 76
|||||||||||||||||||||| || ||||| | ||||||| ||||||||||| ||||
Sbjct: 22 tttttgcgatgtgttcctaatacgtaatataaatgtattggggacattttgcattcatag 81
Query: 77 ctttgtgtcaat 88
||||| |||||
Sbjct: 82 ttttgtatcaat 93
>26848_cfa-mir-450a:mirbase
Length = 91
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 4 agatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacat 63
|||| |||| ||||||||||||||||||||||||||| ||| | ||||||||| |||
Sbjct: 4 agatgctgaactgtttttgcgatgtgttcctaatatgcagtatgaacatattgggagcat 63
Query: 64 tttgcat 70
|||||||
Sbjct: 64 tttgcat 70
>32081_mmu-mir-450a-2:mirbase
Length = 69
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattggg 58
||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 7 tttttgcgatgtgttcctaatatgtactatgagtatattggg 48
>34100_ssc-mir-450c:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcat 70
|||||||||||||||||||||| || | ||| | |||||||||||||||||||
Sbjct: 13 tttttgcgatgtgttcctaatacgtaatctaagtgtattgggaacattttgcat 66
>34101_ssc-mir-450c:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgtgctataattatattgggaacattttgcat 70
|||||||||||||||||||||| || | ||| | |||||||||||||||||||
Sbjct: 13 tttttgcgatgtgttcctaatacgtaatctaagtgtattgggaacattttgcat 66
>34098_ssc-mir-450b:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgtgctataattatattgggaacattttgcat 70
||||||| || ||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 8 tttttgcaatatgttcctgaatatgtaatataagtatattgggaacattttgcat 62
>34099_ssc-mir-450b:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgtgctataattatattgggaacattttgcat 70
||||||| || ||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 8 tttttgcaatatgttcctgaatatgtaatataagtatattgggaacattttgcat 62
>27183_eca-mir-450b:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgtgctataattatattgggaacattttgcat 70
||||||| || ||||||| ||||||| ||||| | |||||||||||||||||||
Sbjct: 11 tttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 65
>27184_eca-mir-450b:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgtgctataattatattgggaacattttgcat 70
||||||| || ||||||| ||||||| ||||| | |||||||||||||||||||
Sbjct: 11 tttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 65
>26849_cfa-mir-450b:mirbase
Length = 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 18 ttttgcgatgtgttcct-aatatgtgctataattatattgggaacattttgcat 70
|||||| || ||||||| ||||||| ||||| | |||||||||||||||||||
Sbjct: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 54
