miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32920_rno-mir-455:mirbase
Length = 78
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 7 ggtgtgagcgtatgtgcctttggactacatcgtgaacgcagcaccatgcagtccacgggc 66
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ggtgtgagcgtatgtgcctttggactacatcgtggacgcagcaccatgcagtccacgggc 60
Query: 67 atatacacttgcctca 82
||||||||||||||||
Sbjct: 61 atatacacttgcctca 76
>26032_gga-mir-455:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||||||||| ||||||||| ||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>26033_gga-mir-455:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||||||||| ||||||||| ||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>27917_mml-mir-455:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>27918_mml-mir-455:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>28665_hsa-mir-455:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>28666_hsa-mir-455:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>31017_ppy-mir-455:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>31018_ppy-mir-455:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>33387_bta-mir-455:mirbase
Length = 89
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>34476_dre-mir-455:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||||||||| ||||||||| ||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>30386_ptr-mir-455:mirbase
Length = 95
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 3 ccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcca 61
|||||| ||||| ||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 1 ccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcca 60
Query: 62 cgggcatatacacttgcctca 82
||||||||||||||||||||
Sbjct: 61 tgggcatatacacttgcctca 81
>34653_fru-mir-455:mirbase
Length = 84
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 3 ccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcca 61
|||||||||||| ||||||||| ||||||||||||||| | || ||||||||||||||||
Sbjct: 1 ccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcca 60
Query: 62 cgggcatatacacttgcctca 82
||||||||||||||||||||
Sbjct: 61 tgggcatatacacttgcctca 81
>25863_xtr-mir-455:mirbase
Length = 87
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||| ||||| ||||||||| ||||||||||||||| | || |||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>34103_ssc-mir-455:mirbase
Length = 80
Score = 99.6 bits (50), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 10 gtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtccacgggcat 68
||||| ||||||||||||||||||||||||| | || |||||||||||||||| ||||||
Sbjct: 5 gtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcat 64
Query: 69 atacacttgcctca 82
||||||||||||||
Sbjct: 65 atacacttgcctca 78
>27453_mdo-mir-455:mirbase
Length = 87
Score = 91.7 bits (46), Expect = 7e-20
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
||||||| ||||| ||||||||| ||||||||||||||| | || | |||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcccttggactacatcgtggaagccaacaccatgcagtcc 60
Query: 61 acgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctca 82
>34801_tni-mir-455:mirbase
Length = 84
Score = 89.7 bits (45), Expect = 3e-19
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 3 ccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcca 61
||||| |||||| ||||||||| ||||||||||||||| | || ||||||||||||||||
Sbjct: 1 ccctgatgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcca 60
Query: 62 cgggcatatacacttgcctca 82
|||||||||||||| |||||
Sbjct: 61 tgggcatatacactttcctca 81
>26534_tgu-mir-455:mirbase
Length = 71
Score = 87.7 bits (44), Expect = 1e-18
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 16 gtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtccacgggcatatacac 74
||||||||| ||||||||||||||| | || |||||||||||||||| ||||||||||||
Sbjct: 3 gtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatacac 62
Query: 75 ttgcctca 82
||||||||
Sbjct: 63 ttgcctca 70
>26853_cfa-mir-455:mirbase
Length = 58
Score = 75.8 bits (38), Expect = 4e-15
Identities = 54/58 (93%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 17 tatgtgcctttggactacatcgtgaacgc-agcaccatgcagtccacgggcatataca 73
|||||||||||||||||||||||| | || |||||||||||||||| |||||||||||
Sbjct: 1 tatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatataca 58
>34477_dre-mir-455b:mirbase
Length = 105
Score = 71.9 bits (36), Expect = 7e-14
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 10 gtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtccacgggcat 68
||||| ||||||||| ||||||||||| ||| | || |||||||||||||||| ||||||
Sbjct: 17 gtgagggtatgtgcccttggactacattgtggaggccagcaccatgcagtccatgggcat 76
Query: 69 atacactt 76
||||||||
Sbjct: 77 atacactt 84
