miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32091_mmu-mir-465a:mirbase
          Length = 74

 Score =  147 bits (74), Expect = 1e-36
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gccctatttagaatggcactgatgtgataaaataaaaaattgatcagggcctttctaagt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gccctatttagaatggcactgatgtgataaaataaaaaattgatcagggcctttctaagt 60

                        
Query: 61 agagtaaggcttac 74
          ||||||||||||||
Sbjct: 61 agagtaaggcttac 74




>32092_mmu-mir-465b-1:mirbase
          Length = 79

 Score =  113 bits (57), Expect = 2e-26
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  gccctatttagaatggcactgatgtgataaaataaaaaattgatcagggcctttctaagt 60
          ||||||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 7  gccctatttagaatggtgctgatctgatgaaataaaaaattgatcagggcctttctaagt 66

                       
Query: 61 agagtaaggctta 73
          |||||||||||||
Sbjct: 67 agagtaaggctta 79




>32093_mmu-mir-465b-1:mirbase
          Length = 79

 Score =  113 bits (57), Expect = 2e-26
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  gccctatttagaatggcactgatgtgataaaataaaaaattgatcagggcctttctaagt 60
          ||||||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 7  gccctatttagaatggtgctgatctgatgaaataaaaaattgatcagggcctttctaagt 66

                       
Query: 61 agagtaaggctta 73
          |||||||||||||
Sbjct: 67 agagtaaggctta 79




>32094_mmu-mir-465b-2:mirbase
          Length = 79

 Score =  113 bits (57), Expect = 2e-26
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  gccctatttagaatggcactgatgtgataaaataaaaaattgatcagggcctttctaagt 60
          ||||||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 7  gccctatttagaatggtgctgatctgatgaaataaaaaattgatcagggcctttctaagt 66

                       
Query: 61 agagtaaggctta 73
          |||||||||||||
Sbjct: 67 agagtaaggctta 79




>32095_mmu-mir-465b-2:mirbase
          Length = 79

 Score =  113 bits (57), Expect = 2e-26
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  gccctatttagaatggcactgatgtgataaaataaaaaattgatcagggcctttctaagt 60
          ||||||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 7  gccctatttagaatggtgctgatctgatgaaataaaaaattgatcagggcctttctaagt 66

                       
Query: 61 agagtaaggctta 73
          |||||||||||||
Sbjct: 67 agagtaaggctta 79




>32096_mmu-mir-465c-1:mirbase
          Length = 81

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  gccctatttagaatggcactgatgtgataaa--ataaaaaattgatcagggcctttctaa 58
          ||||||||||||||||| ||||| |||| ||  | |||||| ||||||||||||||||||
Sbjct: 7  gccctatttagaatggcgctgatctgatgaataaaaaaaaaatgatcagggcctttctaa 66

                         
Query: 59 gtagagtaaggctta 73
          |||||||||||||||
Sbjct: 67 gtagagtaaggctta 81




>32097_mmu-mir-465c-1:mirbase
          Length = 81

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  gccctatttagaatggcactgatgtgataaa--ataaaaaattgatcagggcctttctaa 58
          ||||||||||||||||| ||||| |||| ||  | |||||| ||||||||||||||||||
Sbjct: 7  gccctatttagaatggcgctgatctgatgaataaaaaaaaaatgatcagggcctttctaa 66

                         
Query: 59 gtagagtaaggctta 73
          |||||||||||||||
Sbjct: 67 gtagagtaaggctta 81




>32098_mmu-mir-465c-2:mirbase
          Length = 81

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  gccctatttagaatggcactgatgtgataaa--ataaaaaattgatcagggcctttctaa 58
          ||||||||||||||||| ||||| |||| ||  | |||||| ||||||||||||||||||
Sbjct: 7  gccctatttagaatggcgctgatctgatgaataaaaaaaaaatgatcagggcctttctaa 66

                         
Query: 59 gtagagtaaggctta 73
          |||||||||||||||
Sbjct: 67 gtagagtaaggctta 81




>32099_mmu-mir-465c-2:mirbase
          Length = 81

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  gccctatttagaatggcactgatgtgataaa--ataaaaaattgatcagggcctttctaa 58
          ||||||||||||||||| ||||| |||| ||  | |||||| ||||||||||||||||||
Sbjct: 7  gccctatttagaatggcgctgatctgatgaataaaaaaaaaatgatcagggcctttctaa 66

                         
Query: 59 gtagagtaaggctta 73
          |||||||||||||||
Sbjct: 67 gtagagtaaggctta 81




>32922_rno-mir-465:mirbase
          Length = 77

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 40 ttgatcagggcctttctaagtagagtaaggctta 73
          |||||||| |||||||| ||||||||||||||||
Sbjct: 44 ttgatcagtgcctttctgagtagagtaaggctta 77




>28137_mml-mir-890:mirbase
          Length = 72

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 50 cctttctaagtagagtaaggctta 73
          ||||||| ||||||||||||||||
Sbjct: 49 cctttctgagtagagtaaggctta 72