miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32193_mmu-mir-505:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 aaattgatgcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattgatgcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtca 60
Query: 61 acacttgctggttttctctctggagtatca 90
||||||||||||||||||||||||||||||
Sbjct: 61 acacttgctggttttctctctggagtatca 90
>33088_rno-mir-3589:mirbase
Length = 112
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Minus
Query: 1 aaattgatgcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 aaattgatgcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtca 44
Query: 61 acacttgctggttttctctctggagtatca 90
|||||||||||||| |||||||||||||||
Sbjct: 43 acacttgctggtttcctctctggagtatca 14
>33409_bta-mir-505:mirbase
Length = 90
Score = 145 bits (73), Expect = 6e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 1 aaattgatgcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtca 60
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1 aaattgatgcacccagtgggggagccaggaagtattgatgtttctaccagtttagcgtca 60
Query: 61 acacttgctggttttctctctggag 85
|||||||||||||| ||||||||||
Sbjct: 61 acacttgctggtttcctctctggag 85
>27217_eca-mir-505:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 6 gatgcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtcaacact 65
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gatgcacccagtgggggagccaggaagtattgatgtttctgccagtttagcgtcaacact 60
Query: 66 tgctggttttctctctggag 85
||||||||| ||||||||||
Sbjct: 61 tgctggtttcctctctggag 80
>27947_mml-mir-505:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 6 gatgcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtcaacact 65
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gatgcacccagtgggggagccaggaagtattgatgtttctgccagtttagcgtcaacact 60
Query: 66 tgctggttttctctctggag 85
||||||||| ||||||||||
Sbjct: 61 tgctggtttcctctctggag 80
>28702_hsa-mir-505:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 6 gatgcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtcaacact 65
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gatgcacccagtgggggagccaggaagtattgatgtttctgccagtttagcgtcaacact 60
Query: 66 tgctggttttctctctggag 85
||||||||| ||||||||||
Sbjct: 61 tgctggtttcctctctggag 80
>30409_ptr-mir-505:mirbase
Length = 83
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 6 gatgcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtcaacact 65
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gatgcacccagtgggggagccaggaagtattgatgtttctgccagtttagcgtcaacact 60
Query: 66 tgctggttttctctctggag 85
||||||||| ||||||||||
Sbjct: 61 tgctggtttcctctctggag 80
>31046_ppy-mir-505:mirbase
Length = 83
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 6 gatgcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtcaacact 65
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gatgcacccagtgggggagccaggaagtattgatgtttctgccagtttagcgtcaacact 60
Query: 66 tgctggttttctctctggag 85
||||||||| ||||||||||
Sbjct: 61 tgctggtttcctctctggag 80
>34117_ssc-mir-505:mirbase
Length = 80
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 9 gcacccagtgggggagccaggaagtattgatgtttctgccaggttagcgtcaacacttgc 68
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcactcagtgggggagccaggaagtattgatgtttctgccaggttagcgtcaacacttgc 60
Query: 69 tggttttctctctggag 85
|||||| ||||||||||
Sbjct: 61 tggtttcctctctggag 77
>26872_cfa-mir-505:mirbase
Length = 76
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 14 cagtgggggagccaggaagtattgatgtttctgccaggttagcgtcaacacttgctggtt 73
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cagtgggggagccaggaagtattgatgtttctgccagtttagcgtcaacacttgctggtt 60
Query: 74 ttctctctggag 85
| ||||||||||
Sbjct: 61 tcctctctggag 72
>32945_rno-mir-505:mirbase
Length = 67
Score = 125 bits (63), Expect = 6e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 15 agtgggggagccaggaagtattgatgtttctgccaggttagcgtcaacacttgctggttt 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgggggagccaggaagtattgatgtttctgccaggttagcgtcaacacttgctggttt 60
Query: 75 tctctct 81
||||||
Sbjct: 61 cctctct 67
