miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32202_mmu-mir-539:mirbase
Length = 74
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggctcttttggatgaatcatacaaggataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttggctcttttggatgaatcatacaaggataa 60
Query: 61 tttctttttgagta 74
||||||||||||||
Sbjct: 61 tttctttttgagta 74
>32949_rno-mir-539:mirbase
Length = 76
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggctcttttggatgaatcatacaaggataa 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 2 tacttgaggagaaattatccttggtgtgtttgctcttttggatgaatcatacaagggtaa 61
Query: 61 tttctttttgagta 74
|||||||| |||||
Sbjct: 62 tttcttttcgagta 75
>33070_rno-mir-3576:mirbase
Length = 115
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Minus
Query: 1 tacttgaggagaaattatccttggtgtgttggctcttttggatgaatcatacaaggataa 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 94 tacttgaggagaaattatccttggtgtgtttgctcttttggatgaatcatacaagggtaa 35
Query: 61 tttctttttgagta 74
|||||||| |||||
Sbjct: 34 tttcttttcgagta 21
>27989_mml-mir-539:mirbase
Length = 78
Score = 89.7 bits (45), Expect = 2e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
|||||||||||||||||||||||||||||| || | ||| |||||||||||||||||
Sbjct: 2 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61
Query: 59 aatttctttttgagta 74
||||||||||||||||
Sbjct: 62 aatttctttttgagta 77
>28787_hsa-mir-539:mirbase
Length = 78
Score = 89.7 bits (45), Expect = 2e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
|||||||||||||||||||||||||||||| || | ||| |||||||||||||||||
Sbjct: 2 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61
Query: 59 aatttctttttgagta 74
||||||||||||||||
Sbjct: 62 aatttctttttgagta 77
>30466_ptr-mir-539:mirbase
Length = 77
Score = 89.7 bits (45), Expect = 2e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
|||||||||||||||||||||||||||||| || | ||| |||||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 60
Query: 59 aatttctttttgagta 74
||||||||||||||||
Sbjct: 61 aatttctttttgagta 76
>31126_ppy-mir-539:mirbase
Length = 78
Score = 89.7 bits (45), Expect = 2e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
|||||||||||||||||||||||||||||| || | ||| |||||||||||||||||
Sbjct: 2 tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61
Query: 59 aatttctttttgagta 74
||||||||||||||||
Sbjct: 62 aatttctttttgagta 77
>33411_bta-mir-539:mirbase
Length = 78
Score = 89.7 bits (45), Expect = 2e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
|||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||
Sbjct: 2 tacttgaggagaaattatccttggtgtgttcgctttatttgggatgaatcatacaaggac 61
Query: 59 aatttctttttgagta 74
||||||||| ||||||
Sbjct: 62 aatttctttctgagta 77
>33864_oar-mir-539:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 2e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
|||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||
Sbjct: 16 tacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaaggac 75
Query: 59 aatttctttttgagta 74
||||||||||||||||
Sbjct: 76 aatttctttttgagta 91
>33865_oar-mir-539:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 2e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
|||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||
Sbjct: 16 tacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaaggac 75
Query: 59 aatttctttttgagta 74
||||||||||||||||
Sbjct: 76 aatttctttttgagta 91
>26875_cfa-mir-539:mirbase
Length = 76
Score = 87.7 bits (44), Expect = 1e-18
Identities = 70/76 (92%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggctct-tttg-gatgaatcatacaaggat 58
|||||||||||||||||||||||||||||| ||| | |||| || ||||||||||||||
Sbjct: 1 tacttgaggagaaattatccttggtgtgttcgctgtgtttgtgaggaatcatacaaggac 60
Query: 59 aatttctttttgagta 74
||||||||||||||||
Sbjct: 61 aatttctttttgagta 76
>27225_eca-mir-539:mirbase
Length = 78
Score = 87.7 bits (44), Expect = 1e-18
Identities = 70/76 (92%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttggctct-tttg-gatgaatcatacaaggat 58
||||||||||||||||||||||| |||||| ||| | |||| |||||||||||||||||
Sbjct: 2 tacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaaggac 61
Query: 59 aatttctttttgagta 74
||||||||||||||||
Sbjct: 62 aatttctttttgagta 77
