miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32202_mmu-mir-539:mirbase
          Length = 74

 Score =  147 bits (74), Expect = 1e-36
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggctcttttggatgaatcatacaaggataa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tacttgaggagaaattatccttggtgtgttggctcttttggatgaatcatacaaggataa 60

                        
Query: 61 tttctttttgagta 74
          ||||||||||||||
Sbjct: 61 tttctttttgagta 74




>32949_rno-mir-539:mirbase
          Length = 76

 Score =  123 bits (62), Expect = 2e-29
 Identities = 71/74 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggctcttttggatgaatcatacaaggataa 60
          |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 2  tacttgaggagaaattatccttggtgtgtttgctcttttggatgaatcatacaagggtaa 61

                        
Query: 61 tttctttttgagta 74
          |||||||| |||||
Sbjct: 62 tttcttttcgagta 75




>33070_rno-mir-3576:mirbase
          Length = 115

 Score =  123 bits (62), Expect = 2e-29
 Identities = 71/74 (95%)
 Strand = Plus / Minus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggctcttttggatgaatcatacaaggataa 60
          |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 94 tacttgaggagaaattatccttggtgtgtttgctcttttggatgaatcatacaagggtaa 35

                        
Query: 61 tttctttttgagta 74
          |||||||| |||||
Sbjct: 34 tttcttttcgagta 21




>27989_mml-mir-539:mirbase
          Length = 78

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 69/76 (90%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
          |||||||||||||||||||||||||||||| ||  | |||  ||||||||||||||||| 
Sbjct: 2  tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61

                          
Query: 59 aatttctttttgagta 74
          ||||||||||||||||
Sbjct: 62 aatttctttttgagta 77




>28787_hsa-mir-539:mirbase
          Length = 78

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 69/76 (90%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
          |||||||||||||||||||||||||||||| ||  | |||  ||||||||||||||||| 
Sbjct: 2  tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61

                          
Query: 59 aatttctttttgagta 74
          ||||||||||||||||
Sbjct: 62 aatttctttttgagta 77




>30466_ptr-mir-539:mirbase
          Length = 77

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 69/76 (90%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
          |||||||||||||||||||||||||||||| ||  | |||  ||||||||||||||||| 
Sbjct: 1  tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 60

                          
Query: 59 aatttctttttgagta 74
          ||||||||||||||||
Sbjct: 61 aatttctttttgagta 76




>31126_ppy-mir-539:mirbase
          Length = 78

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 69/76 (90%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
          |||||||||||||||||||||||||||||| ||  | |||  ||||||||||||||||| 
Sbjct: 2  tacttgaggagaaattatccttggtgtgttcgctttatttatgatgaatcatacaaggac 61

                          
Query: 59 aatttctttttgagta 74
          ||||||||||||||||
Sbjct: 62 aatttctttttgagta 77




>33411_bta-mir-539:mirbase
          Length = 78

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 69/76 (90%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
          |||||||||||||||||||||||||||||| ||  | ||| |||||||||||||||||| 
Sbjct: 2  tacttgaggagaaattatccttggtgtgttcgctttatttgggatgaatcatacaaggac 61

                          
Query: 59 aatttctttttgagta 74
          ||||||||| ||||||
Sbjct: 62 aatttctttctgagta 77




>33864_oar-mir-539:mirbase
          Length = 110

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 69/76 (90%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
          ||||||||||||||||||||||||||||||  |  | ||| |||||||||||||||||| 
Sbjct: 16 tacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaaggac 75

                          
Query: 59 aatttctttttgagta 74
          ||||||||||||||||
Sbjct: 76 aatttctttttgagta 91




>33865_oar-mir-539:mirbase
          Length = 110

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 69/76 (90%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggc--tcttttggatgaatcatacaaggat 58
          ||||||||||||||||||||||||||||||  |  | ||| |||||||||||||||||| 
Sbjct: 16 tacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaaggac 75

                          
Query: 59 aatttctttttgagta 74
          ||||||||||||||||
Sbjct: 76 aatttctttttgagta 91




>26875_cfa-mir-539:mirbase
          Length = 76

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 70/76 (92%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggctct-tttg-gatgaatcatacaaggat 58
          |||||||||||||||||||||||||||||| ||| | |||| || |||||||||||||| 
Sbjct: 1  tacttgaggagaaattatccttggtgtgttcgctgtgtttgtgaggaatcatacaaggac 60

                          
Query: 59 aatttctttttgagta 74
          ||||||||||||||||
Sbjct: 61 aatttctttttgagta 76




>27225_eca-mir-539:mirbase
          Length = 78

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 70/76 (92%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacttgaggagaaattatccttggtgtgttggctct-tttg-gatgaatcatacaaggat 58
          ||||||||||||||||||||||| |||||| ||| | |||| ||||||||||||||||| 
Sbjct: 2  tacttgaggagaaattatccttgctgtgttcgctttatttgtgatgaatcatacaaggac 61

                          
Query: 59 aatttctttttgagta 74
          ||||||||||||||||
Sbjct: 62 aatttctttttgagta 77