miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32206_mmu-mir-542:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 ggatctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacaga 60
Query: 61 ttgataactgaaaggtctgggagcc 85
|||||||||||||||||||||||||
Sbjct: 61 ttgataactgaaaggtctgggagcc 85
>27227_eca-mir-542:mirbase
Length = 86
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 5 ctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattga 64
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 ctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattga 65
Query: 65 taactgaaaggtctgggagcc 85
|||||||||||||||||||||
Sbjct: 66 taactgaaaggtctgggagcc 86
>27228_eca-mir-542:mirbase
Length = 86
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 5 ctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattga 64
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 ctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattga 65
Query: 65 taactgaaaggtctgggagcc 85
|||||||||||||||||||||
Sbjct: 66 taactgaaaggtctgggagcc 86
>27991_mml-mir-542:mirbase
Length = 97
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 5 ctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattga 64
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 ctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattga 65
Query: 65 taactgaaaggtctgggagcc 85
|||||||||||||||||||||
Sbjct: 66 taactgaaaggtctgggagcc 86
>27992_mml-mir-542:mirbase
Length = 97
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 5 ctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattga 64
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 ctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattga 65
Query: 65 taactgaaaggtctgggagcc 85
|||||||||||||||||||||
Sbjct: 66 taactgaaaggtctgggagcc 86
>33413_bta-mir-542:mirbase
Length = 97
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 5 ctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattga 64
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11 ctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattga 70
Query: 65 taactgaaaggtctgggagcc 85
|||||||||||||||||||||
Sbjct: 71 taactgaaaggtctgggagcc 91
>28789_hsa-mir-542:mirbase
Length = 97
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 2 gatctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagat 61
|||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 3 gatctcagacatctcggggatcatcatgtcacgagataccagtgtgcacttgtgacagat 62
Query: 62 tgataactgaaaggtctgggagcc 85
||||||||||||||||||||||||
Sbjct: 63 tgataactgaaaggtctgggagcc 86
>28790_hsa-mir-542:mirbase
Length = 97
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 2 gatctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagat 61
|||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 3 gatctcagacatctcggggatcatcatgtcacgagataccagtgtgcacttgtgacagat 62
Query: 62 tgataactgaaaggtctgggagcc 85
||||||||||||||||||||||||
Sbjct: 63 tgataactgaaaggtctgggagcc 86
>31128_ppy-mir-542:mirbase
Length = 96
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 2 gatctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagat 61
|||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 3 gatctcagacatctcggggatcatcatgtcacgagataccagtgtgcacttgtgacagat 62
Query: 62 tgataactgaaaggtctgggagcc 85
||||||||||||||||||||||||
Sbjct: 63 tgataactgaaaggtctgggagcc 86
>31129_ppy-mir-542:mirbase
Length = 96
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 2 gatctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagat 61
|||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 3 gatctcagacatctcggggatcatcatgtcacgagataccagtgtgcacttgtgacagat 62
Query: 62 tgataactgaaaggtctgggagcc 85
||||||||||||||||||||||||
Sbjct: 63 tgataactgaaaggtctgggagcc 86
>32952_rno-mir-542:mirbase
Length = 79
Score = 141 bits (71), Expect = 9e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 4 tctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattg 63
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 tctcagacgtctcggggatcatcatgtcacgagataccactgcgcacttgtgacagattg 60
Query: 64 ataactgaaaggtctggga 82
|||||||||||||||||||
Sbjct: 61 ataactgaaaggtctggga 79
>32953_rno-mir-542:mirbase
Length = 79
Score = 141 bits (71), Expect = 9e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 4 tctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattg 63
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 tctcagacgtctcggggatcatcatgtcacgagataccactgcgcacttgtgacagattg 60
Query: 64 ataactgaaaggtctggga 82
|||||||||||||||||||
Sbjct: 61 ataactgaaaggtctggga 79
>34120_ssc-mir-542:mirbase
Length = 80
Score = 141 bits (71), Expect = 9e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 5 ctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattga 64
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 2 ctcagacgtctcggggatcatcatgtcacgagagaccactgtgcacttgtgacagattga 61
Query: 65 taactgaaaggtctgggag 83
|||||||||||||||||||
Sbjct: 62 taactgaaaggtctgggag 80
>34121_ssc-mir-542:mirbase
Length = 80
Score = 141 bits (71), Expect = 9e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 5 ctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattga 64
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 2 ctcagacgtctcggggatcatcatgtcacgagagaccactgtgcacttgtgacagattga 61
Query: 65 taactgaaaggtctgggag 83
|||||||||||||||||||
Sbjct: 62 taactgaaaggtctgggag 80
>33791_bta-mir-3601:mirbase
Length = 78
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Minus
Query: 5 ctcagacgtctcggggatcatcatgtcacgagataccactgtgcccttgtgacagattga 64
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 77 ctcagacatctcggggatcatcatgtcacgagataccactgtgcacttgtgacagattga 18
Query: 65 taactgaaaggtctggg 81
|||||||||||||||||
Sbjct: 17 taactgaaaggtctggg 1
>26876_cfa-mir-542:mirbase
Length = 59
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 15 tcggggatcatcatgtcacgagataccactgtgcccttgtgacagattgataactgaaa 73
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tcggggatcatcatgtcacgagataccactgtgcacttgtgacagattgataactgaaa 59
