miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32954_rno-mir-543:mirbase
Length = 80
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 tgcttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tgcttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtg 62
Query: 61 cacttctttttcagca 76
||||||||||||||||
Sbjct: 63 cacttctttttcagca 78
>33414_bta-mir-543:mirbase
Length = 80
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 tgcttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtg 60
||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 3 tgcttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtg 62
Query: 61 cacttctttttcag 74
||||||||||||||
Sbjct: 63 cacttctttttcag 76
>33868_oar-mir-543:mirbase
Length = 123
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 tgcttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtg 60
||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 31 tgcttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtg 90
Query: 61 cacttctttttcag 74
||||||||||||||
Sbjct: 91 cacttctttttcag 104
>33869_oar-mir-543:mirbase
Length = 123
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 tgcttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtg 60
||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 31 tgcttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtg 90
Query: 61 cacttctttttcag 74
||||||||||||||
Sbjct: 91 cacttctttttcag 104
>27993_mml-mir-543:mirbase
Length = 80
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 3 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 62
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 5 cttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgca 64
Query: 63 cttctttttcag 74
||||||||||||
Sbjct: 65 cttctttttcag 76
>28791_hsa-mir-543:mirbase
Length = 78
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 3 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 62
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 3 cttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgca 62
Query: 63 cttctttttcag 74
||||||||||||
Sbjct: 63 cttctttttcag 74
>31130_ppy-mir-543:mirbase
Length = 78
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 3 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 62
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 3 cttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgca 62
Query: 63 cttctttttcag 74
||||||||||||
Sbjct: 63 cttctttttcag 74
>27229_eca-mir-543:mirbase
Length = 72
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 3 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 62
||||| ||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 1 cttaaggagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgca 60
Query: 63 cttctttttcag 74
||||||||||||
Sbjct: 61 cttctttttcag 72
>30467_ptr-mir-543:mirbase
Length = 77
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 3 cttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgca 62
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 2 cttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgca 61
Query: 63 cttctttttcag 74
|||||| |||||
Sbjct: 62 cttcttcttcag 73
>26877_cfa-mir-543:mirbase
Length = 58
Score = 91.7 bits (46), Expect = 6e-20
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 11 gaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgcacttctt 68
||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgcacttctt 58
>27935_mml-mir-495:mirbase
Length = 82
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 10 agaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 69
||||||||||| || ||||||||||||||||||||||||| | |||||||||||||
Sbjct: 13 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 72
Query: 70 ttc 72
|||
Sbjct: 73 ttc 75
>28686_hsa-mir-495:mirbase
Length = 82
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 10 agaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 69
||||||||||| || ||||||||||||||||||||||||| | |||||||||||||
Sbjct: 13 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 72
Query: 70 ttc 72
|||
Sbjct: 73 ttc 75
>30398_ptr-mir-495:mirbase
Length = 81
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 10 agaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 69
||||||||||| || ||||||||||||||||||||||||| | |||||||||||||
Sbjct: 12 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 71
Query: 70 ttc 72
|||
Sbjct: 72 ttc 74
>31034_ppy-mir-495:mirbase
Length = 79
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 10 agaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 69
||||||||||| || ||||||||||||||||||||||||| | |||||||||||||
Sbjct: 10 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 69
Query: 70 ttc 72
|||
Sbjct: 70 ttc 72
>27205_eca-mir-495:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 1e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 10 agaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 69
||||||||||| || ||||||||| ||||||||||||||| | |||||||||||||
Sbjct: 13 agaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatggtgcacttcttt 72
Query: 70 ttc 72
|||
Sbjct: 73 ttc 75
>32937_rno-mir-495:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 42/48 (87%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 26 tttttcgcttt-atatgtgacgaaacattcgcggtgcacttctttttc 72
||||||||||| || |||||||||||| | ||||||||||||||||
Sbjct: 27 tttttcgcttttatttgtgacgaaacaaacatggtgcacttctttttc 74
