miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32210_mmu-mir-544:mirbase
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
Query: 61 gcaagctctcaagtgatg 78
||||||||||||||||||
Sbjct: 61 gcaagctctcaagtgatg 78
>32955_rno-mir-544:mirbase
Length = 78
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 1 cacctagggatcttgttaaaaagcagattctgattgagggaccaagattctgcattttta 60
Query: 61 gcaagctctcaagtgatg 78
||||||||||||||||||
Sbjct: 61 gcaagctctcaagtgatg 78
>27994_mml-mir-544:mirbase
Length = 91
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||
Sbjct: 9 cacctagggatcttgttaaaaagcagattctgattcagggaccaagattctgcattttta 68
Query: 61 gcaagctctcaagtgatg 78
||||| ||||||||||||
Sbjct: 69 gcaagttctcaagtgatg 86
>28792_hsa-mir-544:mirbase
Length = 91
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||
Sbjct: 9 cacctagggatcttgttaaaaagcagattctgattcagggaccaagattctgcattttta 68
Query: 61 gcaagctctcaagtgatg 78
||||| ||||||||||||
Sbjct: 69 gcaagttctcaagtgatg 86
>30468_ptr-mir-544:mirbase
Length = 90
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||
Sbjct: 8 cacctagggatcttgttaaaaagcagattctgattcagggaccaagattctgcattttta 67
Query: 61 gcaagctctcaagtgatg 78
||||| ||||||||||||
Sbjct: 68 gcaagttctcaagtgatg 85
>31131_ppy-mir-544:mirbase
Length = 91
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||
Sbjct: 9 cacctagggatcttgttaaaaagcagattctgattcagggaccaagattctgcattttta 68
Query: 61 gcaagctctcaagtgatg 78
||||| ||||||||||||
Sbjct: 69 gcaagttctcaagtgatg 86
>26878_cfa-mir-544:mirbase
Length = 89
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||
Sbjct: 9 cacctagggatcttgttaaaaggcagattctgatttagggaccaagattctgcattttta 68
Query: 61 gcaagctctcaagtgatg 78
||||| || |||||||||
Sbjct: 69 gcaagttcccaagtgatg 86
>27230_eca-mir-544-2:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||
Sbjct: 9 cacctagggatcttgttaaaaggcagattctgattcagggaccaagattctgcattttta 68
Query: 61 gcaagctctcaagtgatg 78
||||| || |||||||||
Sbjct: 69 gcaagttcccaagtgatg 86
>33415_bta-mir-544a:mirbase
Length = 91
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||
Sbjct: 9 cacctagggatcttgttaaaaggcagattctgattcagggaccaagattctgcattttta 68
Query: 61 gcaagctctcaagtgatg 78
||||| || |||||||||
Sbjct: 69 gcaagttcccaagtgatg 86
>33870_oar-mir-544:mirbase
Length = 101
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||
Sbjct: 13 cacctagggatcttgttaaaaggcagattctgattcagggaccaagattctgcattttta 72
Query: 61 gcaagctctcaagt 74
||||| || |||||
Sbjct: 73 gcaagttcccaagt 86
>33871_oar-mir-544:mirbase
Length = 101
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 1 cacctagggatcttgttaaaaagcagagtctgattgaggggccaagattctgcattttta 60
||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||
Sbjct: 13 cacctagggatcttgttaaaaggcagattctgattcagggaccaagattctgcattttta 72
Query: 61 gcaagctctcaagt 74
||||| || |||||
Sbjct: 73 gcaagttcccaagt 86
>27231_eca-mir-544b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 ccaagattctgcatttttagcaag 65
||||||||||||||||||| ||||
Sbjct: 50 ccaagattctgcatttttaacaag 73
