miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32957_rno-mir-551b:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 gtgctcttgtggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcga 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 gtgctcttgtggcccatgaaatcaagcttgggtgagacctggtacagaacaggaaggcga 60
Query: 61 cccatacttggtttcagtggctgcaagaatg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 cccatacttggtttcagtggctgcaagaatg 91
>28006_mml-mir-551b:mirbase
Length = 95
Score = 139 bits (70), Expect = 4e-34
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 1 gtgctcttgtggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcga 60
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5 gtgctctcctggcccatgaaatcaagcgtgggtgagacctggtgcagaacaggaaggcga 64
Query: 61 cccatacttggtttcagtggctgcaagaat 90
||||||||||||||||| |||||| |||||
Sbjct: 65 cccatacttggtttcagaggctgcgagaat 94
>30493_ptr-mir-551b:mirbase
Length = 94
Score = 131 bits (66), Expect = 1e-31
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 1 gtgctcttgtggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcga 60
||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 4 gtgctctcctggcccatgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcga 63
Query: 61 cccatacttggtttcagtggctgcaagaat 90
||||||||||||||||| |||||| |||||
Sbjct: 64 cccatacttggtttcagaggctgcgagaat 93
>28864_hsa-mir-551b:mirbase
Length = 96
Score = 125 bits (63), Expect = 6e-30
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 1 gtgctcttgtggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcga 60
||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 5 gtgctctcctggcccatgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcga 64
Query: 61 cccatacttggtttcagtggctg 83
||||||||||||||||| |||||
Sbjct: 65 cccatacttggtttcagaggctg 87
>31135_ppy-mir-551b:mirbase
Length = 95
Score = 117 bits (59), Expect = 2e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 1 gtgctcttgtggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcga 60
||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 5 gtgctctcctggcccatgaaatcaagtgtgggtgagacctggtgcagaacgggaaggcga 64
Query: 61 cccatacttggtttcagtggctg 83
||||||||||||||||| |||||
Sbjct: 65 cccatacttggtttcagaggctg 87
>33420_bta-mir-551b:mirbase
Length = 95
Score = 115 bits (58), Expect = 6e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 18 gaaatcaagcttgggtgagacctggtgcagaacaggaaggcgacccatacttggtttcag 77
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 gaaatcaagcgtgggtgagacctggtgcagaacaggaaggcgacccatacttggtttcag 81
Query: 78 tggctg 83
|||||
Sbjct: 82 aggctg 87
>26881_cfa-mir-551b:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 1 gtgctcttgtggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcga 60
||||||| ||||||||||||||||| |||||||||||||||||| | | |||||||||
Sbjct: 1 gtgctctcctggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcga 60
Query: 61 cccatacttggtttcagtggctgcaagaat 90
||||||||||||||||| |||||| |||||
Sbjct: 61 cccatacttggtttcagaggctgcgagaat 90
>27234_eca-mir-551b:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 16 atgaaatcaagcttgggtgagacctggtgcagaacaggaaggcgacccatacttggtttc 75
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 atgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcgacccatacttggtttc 60
Query: 76 ag 77
||
Sbjct: 61 ag 62
>31562_oan-mir-551:mirbase
Length = 93
Score = 71.9 bits (36), Expect = 8e-14
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 3 gctcttgtggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcgacc 62
|||| |||||||| ||||||||| |||||||||||| |||| || |||||||||||
Sbjct: 4 gctcctgtggccccagaaatcaaggatgggtgagacctcttgcacaagtggaaggcgacc 63
Query: 63 catacttggtttcagtggct 82
||||||||||||||| ||||
Sbjct: 64 catacttggtttcaggggct 83
>26542_tgu-mir-551:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 54 aaggcgacccatacttggtttcagtggctg 83
|||||||||||||||||||||||| |||||
Sbjct: 38 aaggcgacccatacttggtttcaggggctg 67
>26043_gga-mir-551:mirbase
Length = 113
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 aggcgacccatacttggtttcagtggctg 83
||||||||||||||||||||||| |||||
Sbjct: 64 aggcgacccatacttggtttcaggggctg 92
>27458_mdo-mir-551b:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 aaggcgacccatacttggtttcagtggct 82
|||||||||||||||||||||||| ||||
Sbjct: 43 aaggcgacccatacttggtttcaggggct 71
>25555_pma-mir-551:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 aggcgacccatacttggtttca 76
||||||||||||||||||||||
Sbjct: 47 aggcgacccatacttggtttca 68
