miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32216_mmu-mir-574:mirbase
          Length = 78

 Score = 85.7 bits (43), Expect = 4e-18
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                     
Query: 36 cgctccaagtccacgctcatgcacacacccacacgcccgcacg 78
          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 cgctccaagtccacgctcatgcacacacccacacgcccgcacg 78





>34123_ssc-mir-574:mirbase
          Length = 80

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 44 gtccacgctcatgcacacacccacacgcccgca 76
          |||||||||||||||||||||||||||||||||
Sbjct: 48 gtccacgctcatgcacacacccacacgcccgca 80





>28886_hsa-mir-574:mirbase
          Length = 96

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 44 gtccacgctcatgcacacacccacacgccc 73
          ||||||||||||||||||||||||||||||
Sbjct: 58 gtccacgctcatgcacacacccacacgccc 87





>28887_hsa-mir-574:mirbase
          Length = 96

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 44 gtccacgctcatgcacacacccacacgccc 73
          ||||||||||||||||||||||||||||||
Sbjct: 58 gtccacgctcatgcacacacccacacgccc 87





>26883_cfa-mir-574:mirbase
          Length = 58

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 44 gtccacgctcatgcacacacccaca 68
          |||||||||||||||||||||||||
Sbjct: 34 gtccacgctcatgcacacacccaca 58





>33445_bta-mir-669:mirbase
          Length = 64

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 47 cacgctcatgcacacacccacac 69
          ||||| |||||||||||||||||
Sbjct: 28 cacgcacatgcacacacccacac 6