miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32218_mmu-mir-582:mirbase
          Length = 81

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  actctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  actctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaaca 60

                               
Query: 61 actgaacccaaagggtgcaaa 81
          |||||||||||||||||||||
Sbjct: 61 actgaacccaaagggtgcaaa 81




>32959_rno-mir-582:mirbase
          Length = 81

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  actctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  actctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaaca 60

                               
Query: 61 actgaacccaaagggtgcaaa 81
          |||||||||||||||||||||
Sbjct: 61 actgaacccaaagggtgcaaa 81




>26885_cfa-mir-582:mirbase
          Length = 81

 Score =  137 bits (69), Expect = 1e-33
 Identities = 78/81 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  actctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaaca 60
          ||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 1  actctttggttacagttgttcaaccagttactaatctagctaattgtaaccagttgaaca 60

                               
Query: 61 actgaacccaaagggtgcaaa 81
          |||||||||||||||||||||
Sbjct: 61 actgaacccaaagggtgcaaa 81




>33423_bta-mir-582:mirbase
          Length = 98

 Score =  135 bits (68), Expect = 5e-33
 Identities = 77/80 (96%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaacaa 61
          |||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 8  ctctttggttacagttgttcaaccagttactaatctacctaattgtaaccagttgaacaa 67

                              
Query: 62 ctgaacccaaagggtgcaaa 81
          ||||||||||||||||||||
Sbjct: 68 ctgaacccaaagggtgcaaa 87




>28896_hsa-mir-582:mirbase
          Length = 98

 Score =  127 bits (64), Expect = 1e-30
 Identities = 76/80 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaacaa 61
          |||||||  ||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 8  ctctttgattacagttgttcaaccagttactaatctaactaattgtaactggttgaacaa 67

                              
Query: 62 ctgaacccaaagggtgcaaa 81
          ||||||||||||||||||||
Sbjct: 68 ctgaacccaaagggtgcaaa 87



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 4  ctttggatacagttgttcaaccagttac 31
          |||||| | |||||||||||||||||||
Sbjct: 79 ctttgggttcagttgttcaaccagttac 52




>28897_hsa-mir-582:mirbase
          Length = 98

 Score =  127 bits (64), Expect = 1e-30
 Identities = 76/80 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaacaa 61
          |||||||  ||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 8  ctctttgattacagttgttcaaccagttactaatctaactaattgtaactggttgaacaa 67

                              
Query: 62 ctgaacccaaagggtgcaaa 81
          ||||||||||||||||||||
Sbjct: 68 ctgaacccaaagggtgcaaa 87



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 4  ctttggatacagttgttcaaccagttac 31
          |||||| | |||||||||||||||||||
Sbjct: 79 ctttgggttcagttgttcaaccagttac 52




>30518_ptr-mir-582:mirbase
          Length = 97

 Score =  127 bits (64), Expect = 1e-30
 Identities = 76/80 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaacaa 61
          |||||||  ||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 7  ctctttgattacagttgttcaaccagttactaatctaactaattgtaactggttgaacaa 66

                              
Query: 62 ctgaacccaaagggtgcaaa 81
          ||||||||||||||||||||
Sbjct: 67 ctgaacccaaagggtgcaaa 86



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 4  ctttggatacagttgttcaaccagttac 31
          |||||| | |||||||||||||||||||
Sbjct: 78 ctttgggttcagttgttcaaccagttac 51




>31161_ppy-mir-582:mirbase
          Length = 98

 Score =  127 bits (64), Expect = 1e-30
 Identities = 76/80 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaacaa 61
          |||||||  ||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 8  ctctttgattacagttgttcaaccagttactaatctaactaattgtaactggttgaacaa 67

                              
Query: 62 ctgaacccaaagggtgcaaa 81
          ||||||||||||||||||||
Sbjct: 68 ctgaacccaaagggtgcaaa 87



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 4  ctttggatacagttgttcaaccagttac 31
          |||||| | |||||||||||||||||||
Sbjct: 79 ctttgggttcagttgttcaaccagttac 52




>31162_ppy-mir-582:mirbase
          Length = 98

 Score =  127 bits (64), Expect = 1e-30
 Identities = 76/80 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaacaa 61
          |||||||  ||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 8  ctctttgattacagttgttcaaccagttactaatctaactaattgtaactggttgaacaa 67

                              
Query: 62 ctgaacccaaagggtgcaaa 81
          ||||||||||||||||||||
Sbjct: 68 ctgaacccaaagggtgcaaa 87



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 4  ctttggatacagttgttcaaccagttac 31
          |||||| | |||||||||||||||||||
Sbjct: 79 ctttgggttcagttgttcaaccagttac 52




>27236_eca-mir-582:mirbase
          Length = 68

 Score =  119 bits (60), Expect = 3e-28
 Identities = 66/68 (97%)
 Strand = Plus / Plus

                                                                      
Query: 5  tttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaacaactg 64
          ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1  tttggttacagttgttcaaccagttactaatctaactaattgtaaccggttgaacaactg 60

                  
Query: 65 aacccaaa 72
          ||||||||
Sbjct: 61 aacccaaa 68




>27237_eca-mir-582:mirbase
          Length = 68

 Score =  119 bits (60), Expect = 3e-28
 Identities = 66/68 (97%)
 Strand = Plus / Plus

                                                                      
Query: 5  tttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaacaactg 64
          ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1  tttggttacagttgttcaaccagttactaatctaactaattgtaaccggttgaacaactg 60

                  
Query: 65 aacccaaa 72
          ||||||||
Sbjct: 61 aacccaaa 68




>28030_mml-mir-582:mirbase
          Length = 98

 Score =  119 bits (60), Expect = 3e-28
 Identities = 75/80 (93%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaacaa 61
          |||||||  |||||||||||||||||||||||||||| |||||||||||  |||||||||
Sbjct: 8  ctctttgattacagttgttcaaccagttactaatctacctaattgtaactggttgaacaa 67

                              
Query: 62 ctgaacccaaagggtgcaaa 81
          ||||||||||||||||||||
Sbjct: 68 ctgaacccaaagggtgcaaa 87



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 4  ctttggatacagttgttcaaccagttac 31
          |||||| | |||||||||||||||||||
Sbjct: 79 ctttgggttcagttgttcaaccagttac 52




>28031_mml-mir-582:mirbase
          Length = 98

 Score =  119 bits (60), Expect = 3e-28
 Identities = 75/80 (93%)
 Strand = Plus / Plus

                                                                      
Query: 2  ctctttggatacagttgttcaaccagttactaatctaactaattgtaacctgttgaacaa 61
          |||||||  |||||||||||||||||||||||||||| |||||||||||  |||||||||
Sbjct: 8  ctctttgattacagttgttcaaccagttactaatctacctaattgtaactggttgaacaa 67

                              
Query: 62 ctgaacccaaagggtgcaaa 81
          ||||||||||||||||||||
Sbjct: 68 ctgaacccaaagggtgcaaa 87



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 4  ctttggatacagttgttcaaccagttac 31
          |||||| | |||||||||||||||||||
Sbjct: 79 ctttgggttcagttgttcaaccagttac 52