miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>28905_hsa-mir-590:mirbase
          Length = 97

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 65

                               
Query: 61 tataagctagtctctgattga 81
          |||||||||||||||||||||
Sbjct: 66 tataagctagtctctgattga 86




>28906_hsa-mir-590:mirbase
          Length = 97

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 65

                               
Query: 61 tataagctagtctctgattga 81
          |||||||||||||||||||||
Sbjct: 66 tataagctagtctctgattga 86




>30525_ptr-mir-590:mirbase
          Length = 96

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 64

                               
Query: 61 tataagctagtctctgattga 81
          |||||||||||||||||||||
Sbjct: 65 tataagctagtctctgattga 85




>32219_mmu-mir-590:mirbase
          Length = 81

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60

                               
Query: 61 tataagctagtctctgattga 81
          |||||||||||||||||||||
Sbjct: 61 tataagctagtctctgattga 81




>31169_ppy-mir-590:mirbase
          Length = 97

 Score =  153 bits (77), Expect = 2e-38
 Identities = 80/81 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6  agtcagaaatgagcttattcataaaagtgcagtatggtggagtcaatctgtaattttatg 65

                               
Query: 61 tataagctagtctctgattga 81
          |||||||||||||||||||||
Sbjct: 66 tataagctagtctctgattga 86




>31170_ppy-mir-590:mirbase
          Length = 97

 Score =  153 bits (77), Expect = 2e-38
 Identities = 80/81 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6  agtcagaaatgagcttattcataaaagtgcagtatggtggagtcaatctgtaattttatg 65

                               
Query: 61 tataagctagtctctgattga 81
          |||||||||||||||||||||
Sbjct: 66 tataagctagtctctgattga 86




>28037_mml-mir-590:mirbase
          Length = 97

 Score =  125 bits (63), Expect = 5e-30
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
          ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 6  agtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatg 65

                         
Query: 61 tataagctagtctct 75
          |||||||| ||||||
Sbjct: 66 tataagctggtctct 80




>28038_mml-mir-590:mirbase
          Length = 97

 Score =  125 bits (63), Expect = 5e-30
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatg 60
          ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 6  agtcagaaatgagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatg 65

                         
Query: 61 tataagctagtctct 75
          |||||||| ||||||
Sbjct: 66 tataagctggtctct 80




>27238_eca-mir-590:mirbase
          Length = 81

 Score = 91.7 bits (46), Expect = 7e-20
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                      
Query: 3  tcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgta 62
          ||||||| |||||||||||||||||| ||||||  |  ||| || |||||||||||||||
Sbjct: 4  tcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgta 63

                            
Query: 63 taagctagtctctgattg 80
          ||||||||||||||||||
Sbjct: 64 taagctagtctctgattg 81




>27239_eca-mir-590:mirbase
          Length = 81

 Score = 91.7 bits (46), Expect = 7e-20
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                      
Query: 3  tcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgta 62
          ||||||| |||||||||||||||||| ||||||  |  ||| || |||||||||||||||
Sbjct: 4  tcagaaacgagcttattcataaaagtacagtataatccagtaaacctgtaattttatgta 63

                            
Query: 63 taagctagtctctgattg 80
          ||||||||||||||||||
Sbjct: 64 taagctagtctctgattg 81




>31563_oan-mir-590:mirbase
          Length = 122

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 70/79 (88%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   tcagaaatgagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgta 62
           |||||||||||||||| ||||||||| |||||| || | || || ||||| ||||||| |
Sbjct: 23  tcagaaatgagcttatccataaaagtacagtatcgtca-gtaaacctgtacttttatgga 81

                              
Query: 63  taagctagtctctgattga 81
           |||||||||||||||||||
Sbjct: 82  taagctagtctctgattga 100




>26887_cfa-mir-590:mirbase
          Length = 61

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                      
Query: 11 gagcttattcataaaagtgcagtatggtgaagtcaatctgtaattttatgtataagctag 70
          |||||||||||||||||| ||||||| |  ||| || |||||||||||||||||||||||
Sbjct: 1  gagcttattcataaaagtacagtatgatccagtaaacctgtaattttatgtataagctag 60

           
Query: 71 t 71
          |
Sbjct: 61 t 61