miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32961_rno-mir-598:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
Query: 61 tcatcgttatcatcatcat 79
|||||||||||||||||||
Sbjct: 61 tcatcgttatcatcatcat 79
>32962_rno-mir-598:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
Query: 61 tcatcgttatcatcatcat 79
|||||||||||||||||||
Sbjct: 61 tcatcgttatcatcatcat 79
>28043_mml-mir-598:mirbase
Length = 97
Score = 109 bits (55), Expect = 3e-25
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
|||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||| |
Sbjct: 14 gctgatgctggcggtgatcccgatggtgtgagctggaaatggggtgctacgtcatcgttg 73
Query: 61 tcatcgttatcatcatcat 79
||||||| |||||||||||
Sbjct: 74 tcatcgtcatcatcatcat 92
>28913_hsa-mir-598:mirbase
Length = 97
Score = 109 bits (55), Expect = 3e-25
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
|||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||| |
Sbjct: 14 gctgatgctggcggtgatcccgatggtgtgagctggaaatggggtgctacgtcatcgttg 73
Query: 61 tcatcgttatcatcatcat 79
||||||| |||||||||||
Sbjct: 74 tcatcgtcatcatcatcat 92
>30532_ptr-mir-598:mirbase
Length = 96
Score = 109 bits (55), Expect = 3e-25
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
|||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||| |
Sbjct: 14 gctgatgctggcggtgatcccgatggtgtgagctggaaatggggtgctacgtcatcgttg 73
Query: 61 tcatcgttatcatcatcat 79
||||||| |||||||||||
Sbjct: 74 tcatcgtcatcatcatcat 92
>31177_ppy-mir-598:mirbase
Length = 97
Score = 109 bits (55), Expect = 3e-25
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 gctgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcg 60
|||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||| |
Sbjct: 14 gctgatgctggcggtgatcccgatggtgtgagctggaaatggggtgctacgtcatcgttg 73
Query: 61 tcatcgttatcatcatcat 79
||||||| |||||||||||
Sbjct: 74 tcatcgtcatcatcatcat 92
>27241_eca-mir-598:mirbase
Length = 73
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 3 tgatgctggcggtgatgccgatggtgcgagctgaaaatgggctgctacgtcatcgtcgtc 62
|||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||| |||
Sbjct: 1 tgatgctggcagtgatgccgatggtgcgggctggaaatggggtgctacgtcatcgttgtc 60
Query: 63 atcgttatcatca 75
||||| |||||||
Sbjct: 61 atcgtcatcatca 73
