miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32224_mmu-mir-615:mirbase
          Length = 92

 Score =  182 bits (92), Expect = 3e-47
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60

                                          
Query: 61 ccgagcctgggtctccctcttccccccatccc 92
          ||||||||||||||||||||||||||||||||
Sbjct: 61 ccgagcctgggtctccctcttccccccatccc 92




>32963_rno-mir-615:mirbase
          Length = 92

 Score =  182 bits (92), Expect = 3e-47
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60

                                          
Query: 61 ccgagcctgggtctccctcttccccccatccc 92
          ||||||||||||||||||||||||||||||||
Sbjct: 61 ccgagcctgggtctccctcttccccccatccc 92




>28930_hsa-mir-615:mirbase
          Length = 96

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61

                                      
Query: 61 ccgagcctgggtctccctcttcccccca 88
          ||||||||||||||||||||||||||||
Sbjct: 62 ccgagcctgggtctccctcttcccccca 89




>28931_hsa-mir-615:mirbase
          Length = 96

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61

                                      
Query: 61 ccgagcctgggtctccctcttcccccca 88
          ||||||||||||||||||||||||||||
Sbjct: 62 ccgagcctgggtctccctcttcccccca 89




>30545_ptr-mir-615:mirbase
          Length = 95

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61

                                      
Query: 61 ccgagcctgggtctccctcttcccccca 88
          ||||||||||||||||||||||||||||
Sbjct: 62 ccgagcctgggtctccctcttcccccca 89




>28054_mml-mir-615:mirbase
          Length = 96

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcgggaggggcggaaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61

                                      
Query: 61 ccgagcctgggtctccctcttcccccca 88
          ||||||||||||||||||||||||||||
Sbjct: 62 ccgagcctgggtctccctcttcccccca 89




>28055_mml-mir-615:mirbase
          Length = 96

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcgggaggggcggaaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61

                                      
Query: 61 ccgagcctgggtctccctcttcccccca 88
          ||||||||||||||||||||||||||||
Sbjct: 62 ccgagcctgggtctccctcttcccccca 89




>27242_eca-mir-615:mirbase
          Length = 97

 Score =  163 bits (82), Expect = 3e-41
 Identities = 85/86 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2  cgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggtc 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4  cgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggtc 63

                                    
Query: 62 cgagcctgggtctccctcttcccccc 87
          ||||||||||||||||||| ||||||
Sbjct: 64 cgagcctgggtctccctctccccccc 89




>27243_eca-mir-615:mirbase
          Length = 97

 Score =  163 bits (82), Expect = 3e-41
 Identities = 85/86 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2  cgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggtc 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4  cgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggtc 63

                                    
Query: 62 cgagcctgggtctccctcttcccccc 87
          ||||||||||||||||||| ||||||
Sbjct: 64 cgagcctgggtctccctctccccccc 89




>33434_bta-mir-615:mirbase
          Length = 93

 Score =  163 bits (82), Expect = 3e-41
 Identities = 85/86 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61

                                    
Query: 61 ccgagcctgggtctccctcttccccc 86
          |||||||||||||||||||| |||||
Sbjct: 62 ccgagcctgggtctccctctcccccc 87




>31193_ppy-mir-615:mirbase
          Length = 96

 Score =  159 bits (80), Expect = 4e-40
 Identities = 86/88 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcgggaggggcgggagggggttccccggtgctcggatctcgagggtgcttattgttcggt 61

                                      
Query: 61 ccgagcctgggtctccctcttcccccca 88
          |||||||||||||||| |||||||||||
Sbjct: 62 ccgagcctgggtctccgtcttcccccca 89




>31194_ppy-mir-615:mirbase
          Length = 96

 Score =  159 bits (80), Expect = 4e-40
 Identities = 86/88 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcgggaggggcgggagggggttccccggtgctcggatctcgagggtgcttattgttcggt 61

                                      
Query: 61 ccgagcctgggtctccctcttcccccca 88
          |||||||||||||||| |||||||||||
Sbjct: 62 ccgagcctgggtctccgtcttcccccca 89




>34124_ssc-mir-615:mirbase
          Length = 88

 Score =  155 bits (78), Expect = 7e-39
 Identities = 84/86 (97%)
 Strand = Plus / Plus

                                                                      
Query: 3  gggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggtcc 62
          |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gggaggggcgggagggggctccccggtgctcggatctcgagggtgcttattgttcggtcc 60

                                    
Query: 63 gagcctgggtctccctcttcccccca 88
          |||||||||||||||||| |||||||
Sbjct: 61 gagcctgggtctccctctccccccca 86




>26890_cfa-mir-615:mirbase
          Length = 85

 Score =  131 bits (66), Expect = 9e-32
 Identities = 82/86 (95%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
          |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 1  tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59

                                    
Query: 61 ccgagcctgggtctccctcttccccc 86
          ||||||| |||||||||||| |||||
Sbjct: 60 ccgagcccgggtctccctctcccccc 85