miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32966_rno-mir-652:mirbase
Length = 81
Score = 143 bits (72), Expect = 3e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 15 actgcacaaccctaggagggggtgccattcacatagagtataattgaatggcgccactag 74
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5 actgcacaaccctaggagggggtgccattcacatagactataattgaatggcgccactag 64
Query: 75 ggttgtgcagtgtaca 90
||||||||||||||||
Sbjct: 65 ggttgtgcagtgtaca 80
>27246_eca-mir-652:mirbase
Length = 98
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 8 gctatgtactgcacaaccctaggagggggtgccattcacatagagtataattgaatggcg 67
|||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 8 gctatgcactgcacaaccctaggagagggtgccattcacatagactataattgaatggcg 67
Query: 68 ccactagggttgtgcagtgtacagcctacac 98
||||||||||||||||||| ||| |||||||
Sbjct: 68 ccactagggttgtgcagtgcacaacctacac 98
>28970_hsa-mir-652:mirbase
Length = 98
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 8 gctatgtactgcacaaccctaggagggggtgccattcacatagagtataattgaatggcg 67
|||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 8 gctatgcactgcacaaccctaggagagggtgccattcacatagactataattgaatggcg 67
Query: 68 ccactagggttgtgcagtgtacagcctacac 98
||||||||||||||||||| ||| |||||||
Sbjct: 68 ccactagggttgtgcagtgcacaacctacac 98
>30573_ptr-mir-652:mirbase
Length = 97
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 8 gctatgtactgcacaaccctaggagggggtgccattcacatagagtataattgaatggcg 67
|||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 7 gctatgcactgcacaaccctaggagagggtgccattcacatagactataattgaatggcg 66
Query: 68 ccactagggttgtgcagtgtacagcctacac 98
||||||||||||||||||| ||| |||||||
Sbjct: 67 ccactagggttgtgcagtgcacaacctacac 97
>31222_ppy-mir-652:mirbase
Length = 94
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 8 gctatgtactgcacaaccctaggagggggtgccattcacatagagtataattgaatggcg 67
|||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 4 gctatgcactgcacaaccctaggagagggtgccattcacatagactataattgaatggcg 63
Query: 68 ccactagggttgtgcagtgtacagcctacac 98
||||||||||||||||||| ||| |||||||
Sbjct: 64 ccactagggttgtgcagtgcacaacctacac 94
>28084_mml-mir-652:mirbase
Length = 98
Score = 133 bits (67), Expect = 3e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 8 gctatgtactgcacaaccctaggagggggtgccattcacatagagtataattgaatggcg 67
|||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 8 gctatgcactgcacaaccctaggagagggtgccattcacatagactataattgaatggcg 67
Query: 68 ccactagggttgtgcagtg 86
|||||||||||||||||||
Sbjct: 68 ccactagggttgtgcagtg 86
>34126_ssc-mir-652:mirbase
Length = 83
Score = 129 bits (65), Expect = 4e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 10 tatgtactgcacaaccctaggagggggtgccattcacatagagtataattgaatggcgcc 69
|||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 1 tatgcactgcacaaccctaggagagggtgccattcacatagactataattgaatggcgcc 60
Query: 70 actagggttgtgcagtg 86
|||||||||||||||||
Sbjct: 61 actagggttgtgcagtg 77
>26894_cfa-mir-652:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 acaaccctaggagggggtgccattcacatagagtataattgaatggcgccactagggttg 79
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 acaaccctaggagagggtgccattcacatagactataattgaatggcgccactagggttg 60
Query: 80 tgc 82
|||
Sbjct: 61 tgc 63
