miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32967_rno-mir-653:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||| |
Sbjct: 7 cattctttcagtgttgaaacattctctactgaaccaagctccaaaacaagttcactgggg 66
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 67 tttgtttcactattgca 83
>26895_cfa-mir-653:mirbase
Length = 91
Score = 105 bits (53), Expect = 5e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| |||||||||||||||||||||| ||||||| |||||||| | ||||||||||||
Sbjct: 2 cattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactggag 61
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 62 tttgtttcaatattgca 78
>27247_eca-mir-653:mirbase
Length = 85
Score = 89.7 bits (45), Expect = 3e-19
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| ||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct: 2 cattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactggag 61
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 62 tttgtttcaatattgca 78
>28971_hsa-mir-653:mirbase
Length = 96
Score = 89.7 bits (45), Expect = 3e-19
Identities = 71/77 (92%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| ||||||||||||||||||||||||||||| |||| |||| | ||||||||||||
Sbjct: 3 cattccttcagtgttgaaacaatctctactgaacc-agcttcaaa-caagttcactggag 60
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 61 tttgtttcaatattgca 77
>30574_ptr-mir-653:mirbase
Length = 95
Score = 89.7 bits (45), Expect = 3e-19
Identities = 71/77 (92%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| ||||||||||||||||||||||||||||| |||| |||| | ||||||||||||
Sbjct: 3 cattccttcagtgttgaaacaatctctactgaacc-agcttcaaa-caagttcactggag 60
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 61 tttgtttcaatattgca 77
>31223_ppy-mir-653:mirbase
Length = 96
Score = 89.7 bits (45), Expect = 3e-19
Identities = 71/77 (92%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| ||||||||||||||||||||||||||||| |||| |||| | ||||||||||||
Sbjct: 3 cattccttcagtgttgaaacaatctctactgaacc-agcttcaaa-caagttcactggag 60
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 61 tttgtttcaatattgca 77
>28085_mml-mir-653:mirbase
Length = 96
Score = 81.8 bits (41), Expect = 7e-17
Identities = 70/77 (90%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 cattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggag 60
||||| ||||||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cattccttcagtgttgaaacaatctctactgaacc-agcttcaaa-caaattcactggag 60
Query: 61 tttgtttcagtattgca 77
||||||||| |||||||
Sbjct: 61 tttgtttcaatattgca 77
>33437_bta-mir-653:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 53/62 (85%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 8 tcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactggagtttgttt 67
|||||||||||||||||||| ||||||| | | | || |||||||||||||||||||
Sbjct: 9 tcagtgttgaaacaatctctgttgaaccatgtt--acaggaagttcactggagtttgttt 66
Query: 68 ca 69
||
Sbjct: 67 ca 68
