miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32969_rno-mir-664-2:mirbase
Length = 59
Score = 109 bits (55), Expect = 2e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 ctggctggggaaaatgactggatagaaaacattattctattcatttactccccagccta 59
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggctggggaaaatgattggatagaaaacattattctattcatttactccccagccta 59
>32968_rno-mir-664-1:mirbase
Length = 59
Score = 101 bits (51), Expect = 6e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 ctggctggggaaaatgactggatagaaaacattattctattcatttactccccagccta 59
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggctggggaaaaagattggatagaaaacattattctattcatttactccccagccta 59
>28984_hsa-mir-664:mirbase
Length = 82
Score = 73.8 bits (37), Expect = 1e-14
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 ctggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctac 60
|||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 12 ctggctagggaaaatgattggatagaaactattattctattcattta-tccccagcctac 70
Query: 61 a 61
|
Sbjct: 71 a 71
>30583_ptr-mir-664:mirbase
Length = 81
Score = 73.8 bits (37), Expect = 1e-14
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 ctggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctac 60
|||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 12 ctggctagggaaaatgattggatagaaactattattctattcattta-tccccagcctac 70
Query: 61 a 61
|
Sbjct: 71 a 71
>28104_mml-mir-664:mirbase
Length = 58
Score = 69.9 bits (35), Expect = 2e-13
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 ctggctggggaaaatgactggatagaaaacattattctattcatttactccccagccta 59
|||||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||
Sbjct: 1 ctggctagggaaaatgattggatagaaaatgttattctattcattta-tccccagccta 58
>31231_ppy-mir-664:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 3e-12
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 ctggctggggaaaatgactggatagaaaacattattctattcatttactccccagcctac 60
|||||| |||||| ||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 12 ctggctagggaaagtgattggatagaaactattattctattcattta-tccccagcctac 70
Query: 61 a 61
|
Sbjct: 71 a 71
>26897_cfa-mir-664:mirbase
Length = 61
Score = 54.0 bits (27), Expect = 1e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 11 aaaatgactggatagaaaacattattctattcatttactccccagcctaca 61
||||||| |||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 11 aaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
>27251_eca-mir-664:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 19 tggatagaaaacattattctattcattta 47
||||||||||| |||| ||||||||||||
Sbjct: 30 tggatagaaaatattactctattcattta 58
>34127_ssc-mir-664:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 19 tggatagaaaacattattctattcatttactccccagcctaca 61
||||||||||| ||||||||||||||| |||||||||||
Sbjct: 30 tggatagaaaatggtattctattcatttatctcccagcctaca 72
>34128_ssc-mir-664:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 19 tggatagaaaacattattctattcatttactccccagcctaca 61
||||||||||| ||||||||||||||| |||||||||||
Sbjct: 30 tggatagaaaatggtattctattcatttatctcccagcctaca 72
