miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32244_mmu-mir-669a-2:mirbase
          Length = 97

 Score =  107 bits (54), Expect = 1e-24
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcacacaca 97
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcacacaca 97




>32236_mmu-mir-669a-1:mirbase
          Length = 97

 Score =  103 bits (52), Expect = 2e-23
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                              
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcacaca 95
          ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ctatatttgaatatacataacatacacacacacgtataaacgcaagcacaca 93




>32237_mmu-mir-669a-1:mirbase
          Length = 97

 Score =  103 bits (52), Expect = 2e-23
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                              
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcacaca 95
          ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ctatatttgaatatacataacatacacacacacgtataaacgcaagcacaca 93




>32239_mmu-mir-669a-10:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32238_mmu-mir-669a-10:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32240_mmu-mir-669a-11:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32241_mmu-mir-669a-11:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32242_mmu-mir-669a-12:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32243_mmu-mir-669a-12:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32248_mmu-mir-669a-4:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32249_mmu-mir-669a-4:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32250_mmu-mir-669a-5:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32251_mmu-mir-669a-5:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32252_mmu-mir-669a-6:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32253_mmu-mir-669a-6:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32254_mmu-mir-669a-7:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32255_mmu-mir-669a-7:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32256_mmu-mir-669a-8:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32257_mmu-mir-669a-8:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32258_mmu-mir-669a-9:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32259_mmu-mir-669a-9:mirbase
          Length = 87

 Score = 99.6 bits (50), Expect = 4e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                            
Query: 44 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 93
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ctatatttgaatatacataacatacacacacacgtataaacgcaagcaca 87




>32246_mmu-mir-669a-3:mirbase
          Length = 109

 Score = 95.6 bits (48), Expect = 6e-21
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                               
Query: 44  ctatatttgaatatacataacatacacacacacgtataaacgcaagcacaca 95
           |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 50  ctatatttgaatatacataacatacacacacatgtataaacgcaagcacaca 101




>32247_mmu-mir-669a-3:mirbase
          Length = 109

 Score = 95.6 bits (48), Expect = 6e-21
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                               
Query: 44  ctatatttgaatatacataacatacacacacacgtataaacgcaagcacaca 95
           |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 50  ctatatttgaatatacataacatacacacacatgtataaacgcaagcacaca 101




>32279_mmu-mir-669o:mirbase
          Length = 96

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                             
Query: 47 tatttgaatatacataacatacacacacacgtataaacgcaagcacacaca 97
          |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 45 tatttgaatatacataacatacacacacacgtataaacacaagcacacaca 95




>32280_mmu-mir-669o:mirbase
          Length = 96

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                             
Query: 47 tatttgaatatacataacatacacacacacgtataaacgcaagcacacaca 97
          |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 45 tatttgaatatacataacatacacacacacgtataaacacaagcacacaca 95




>32281_mmu-mir-669p-1:mirbase
          Length = 87

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 49/51 (96%), Gaps = 2/51 (3%)
 Strand = Plus / Plus

                                                             
Query: 44 ctatatttgaatatacataacat--acacacacacgtataaacgcaagcac 92
          |||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 37 ctatatttgaatatacataacatacacacacacacgtataaacgcaagcac 87




>32282_mmu-mir-669p-2:mirbase
          Length = 87

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 49/51 (96%), Gaps = 2/51 (3%)
 Strand = Plus / Plus

                                                             
Query: 44 ctatatttgaatatacataacat--acacacacacgtataaacgcaagcac 92
          |||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 37 ctatatttgaatatacataacatacacacacacacgtataaacgcaagcac 87




>32265_mmu-mir-669f:mirbase
          Length = 121

 Score = 71.9 bits (36), Expect = 8e-14
 Identities = 43/44 (97%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                      
Query: 51 tgaatatacata-acatacacacacacgtataaacgcaagcaca 93
          |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 49 tgaatatacatatacatacacacacacgtataaacgcaagcaca 92




>32266_mmu-mir-669f:mirbase
          Length = 121

 Score = 71.9 bits (36), Expect = 8e-14
 Identities = 43/44 (97%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                      
Query: 51 tgaatatacata-acatacacacacacgtataaacgcaagcaca 93
          |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 49 tgaatatacatatacatacacacacacgtataaacgcaagcaca 92




>32261_mmu-mir-669c:mirbase
          Length = 109

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 47 tatttgaatatacataacatacacacacac 76
          |||||| ||||| |||||||||||||||||
Sbjct: 45 tatttgcatataaataacatacacacacac 74




>32123_mmu-mir-466d:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 42/48 (87%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                          
Query: 51 tgaatatacata-acatacacacacacgtataaacgcaagcacacaca 97
          |||||||||||| |||||||| ||||| || | ||||| |||||||||
Sbjct: 41 tgaatatacatatacatacacgcacacatagatacgcacgcacacaca 88




>32122_mmu-mir-466d:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 42/48 (87%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                          
Query: 51 tgaatatacata-acatacacacacacgtataaacgcaagcacacaca 97
          |||||||||||| |||||||| ||||| || | ||||| |||||||||
Sbjct: 41 tgaatatacatatacatacacgcacacatagatacgcacgcacacaca 88