miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33099_rno-mir-3596b:mirbase
Length = 95
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 2 gggctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaagg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gggctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaagg 36
Query: 62 agttaactatacgacctgctgcctttcttagggcc 96
|||||||||||||||||||||||||||||||||||
Sbjct: 35 agttaactatacgacctgctgcctttcttagggcc 1
>31757_mmu-let-7d:mirbase
Length = 103
Score = 186 bits (94), Expect = 2e-48
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 tgggctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaag 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tgggttcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaag 62
Query: 61 gagttaactatacgacctgctgcctttcttagggcctt 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gagttaactatacgacctgctgcctttcttagggcctt 100
>27322_mdo-let-7d:mirbase
Length = 106
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 1 tgggctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3 tgggctcctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaag 62
Query: 61 gagttaactatacgacctgctgcctttcttagggc 95
||||||||||||| |||||||||||||||||||||
Sbjct: 63 gagttaactatacaacctgctgcctttcttagggc 97
>26932_eca-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 7 cctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagtta 66
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagata 60
Query: 67 actatacgacctgctgcctttcttagg 93
|||||||||||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>27634_mml-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 7 cctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagtta 66
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 67 actatacgacctgctgcctttcttagg 93
|||||||||||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>28344_hsa-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 7 cctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagtta 66
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 67 actatacgacctgctgcctttcttagg 93
|||||||||||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>30736_ppy-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 7 cctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagtta 66
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggta 60
Query: 67 actatacgacctgctgcctttcttagg 93
|||||||||||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>30131_ptr-let-7d:mirbase
Length = 86
Score = 155 bits (78), Expect = 7e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 8 ctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaa 67
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
Query: 68 ctatacgacctgctgcctttcttagg 93
||||||||||||||||||||||||||
Sbjct: 61 ctatacgacctgctgcctttcttagg 86
>25873_gga-let-7d:mirbase
Length = 103
Score = 149 bits (75), Expect = 4e-37
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 1 tgggctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaag 60
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct: 3 tgggctcctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaag 62
Query: 61 gagttaactatacgacctgctgcctttcttagggc 95
||| ||||||||| |||||||||||||||||||||
Sbjct: 63 gaggtaactatacaacctgctgcctttcttagggc 97
>31411_oan-let-7d:mirbase
Length = 116
Score = 149 bits (75), Expect = 4e-37
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 1 tgggctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 11 tgggctcctaggaagaggtagtaggttgcatagttttagggcagtgattttgctcataag 70
Query: 61 gagttaactatacgacctgctgcctttcttagggc 95
| ||||||||||| |||||||||||||||||||||
Sbjct: 71 gtgttaactatacaacctgctgcctttcttagggc 105
>33113_bta-let-7d:mirbase
Length = 87
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 7 cctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagtta 66
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 1 cctaggaagaggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggta 60
Query: 67 actatacgacctgctgcctttcttagg 93
|||||||||||||||||||||||||||
Sbjct: 61 actatacgacctgctgcctttcttagg 87
>26382_tgu-let-7d:mirbase
Length = 92
Score = 143 bits (72), Expect = 3e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 4 gctcctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggag 63
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct: 1 gctcctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggag 60
Query: 64 ttaactatacgacctgctgcctttcttagggc 95
||||||||| |||||||||||||||||||||
Sbjct: 61 gtaactatacaacctgctgcctttcttagggc 92
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttagggc 42
|||||||||||||| |||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttagggc 39
>25868_gga-let-7a-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>25870_gga-let-7a-3:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 5 gaggtagtaggttgtatagttttaggg 31
>26377_tgu-let-7a-3:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 62 gaggtagtaggttgtatagttttaggg 88
>27318_mdo-let-7a-1:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 16 gaggtagtaggttgtatagttttaggg 42
>27629_mml-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>28339_hsa-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>30126_ptr-let-7a-1:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 6 gaggtagtaggttgtatagttttaggg 32
>30731_ppy-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>31752_mmu-let-7a-1:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>32638_rno-let-7a-1:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>33108_bta-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>33899_ssc-let-7a-2:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttaggg 38
>34165_dre-let-7a-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttaggg 38
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 5 gaggtagtaggttgtatagttttaggg 31
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 13 gaggtagtaggttgtatagttttaggg 39
>25408_pma-let-7a-1:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1 tgggctcctaggaagaggtagtaggttgcatagttttaggg 41
||||||||| || |||||||||||||| ||||||| ||||
Sbjct: 3 tgggctcctgggttgaggtagtaggttgtatagtttaaggg 43
>25871_gga-let-7b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 65/79 (82%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 10 aggaagaggtagtaggttgcatagttttagggcagagattttgccc--acaaggagttaa 67
|||| |||||||||||||| | |||| |||| || |||||||||| | ||||| |||
Sbjct: 2 aggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataa 61
Query: 68 ctatacgacctgctgcctt 86
|||||| |||| |||||||
Sbjct: 62 ctatacaacctactgcctt 80
>26379_tgu-let-7b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 65/79 (82%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 10 aggaagaggtagtaggttgcatagttttagggcagagattttgccc--acaaggagttaa 67
|||| |||||||||||||| | |||| |||| || |||||||||| | ||||| |||
Sbjct: 7 aggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataa 66
Query: 68 ctatacgacctgctgcctt 86
|||||| |||| |||||||
Sbjct: 67 ctatacaacctactgcctt 85
>27632_mml-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaactatacg 74
|||||||||||||| | |||| ||||||| ||| |||||| || || |||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 66
Query: 75 acctgctgcctt 86
|||| |||||||
Sbjct: 67 acctactgcctt 78
>30129_ptr-let-7b:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaactatacg 74
|||||||||||||| | |||| ||||||| ||| |||||| || || |||||||||
Sbjct: 6 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 65
Query: 75 acctgctgcctt 86
|||| |||||||
Sbjct: 66 acctactgcctt 77
>30734_ppy-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaactatacg 74
|||||||||||||| | |||| ||||||| ||| |||||| || || |||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 66
Query: 75 acctgctgcctt 86
|||| |||||||
Sbjct: 67 acctactgcctt 78
>34171_dre-let-7b:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 59 aggagttaactatacgacctgctgcctt 86
||||||||||||||| |||| |||||||
Sbjct: 57 aggagttaactatacaacctactgcctt 84
