miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31758_mmu-let-7e:mirbase
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 cgcgccccccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcgccccccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcac 60
Query: 61 tatacggcctcctagctttccccaggctgcgcc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 tatacggcctcctagctttccccaggctgcgcc 93
>33100_rno-mir-3596c:mirbase
Length = 117
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 1 cgcgccccccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 cgcgccccccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcac 49
Query: 61 tatacggcctcctagctttccccaggctgcgcc 93
|||||||||||||||||||||||||||||||||
Sbjct: 48 tatacggcctcctagctttccccaggctgcgcc 16
>27635_mml-let-7e:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 8 cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 67
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
Query: 68 cctcctagctttccccagg 86
|||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79
>28345_hsa-let-7e:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 8 cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 67
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
Query: 68 cctcctagctttccccagg 86
|||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79
>30737_ppy-let-7e:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 8 cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 67
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
Query: 68 cctcctagctttccccagg 86
|||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79
>33114_bta-let-7e:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 8 cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 67
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacgg 60
Query: 68 cctcctagctttccccagg 86
|||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79
>30132_ptr-let-7e:mirbase
Length = 78
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 9 ccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacggc 68
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
Query: 69 ctcctagctttccccagg 86
||||||||||||||||||
Sbjct: 61 ctcctagctttccccagg 78
>26933_eca-let-7e:mirbase
Length = 79
Score = 133 bits (67), Expect = 2e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 8 cccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacgg 67
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 1 cccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacgg 60
Query: 68 cctcctagctttccccagg 86
|||||||||||||||||||
Sbjct: 61 cctcctagctttccccagg 79
>33901_ssc-let-7e:mirbase
Length = 80
Score = 133 bits (67), Expect = 2e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 7 ccccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacg 66
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 2 ccccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacg 61
Query: 67 gcctcctagctttccccag 85
|||||||||||||||||||
Sbjct: 62 gcctcctagctttccccag 80
>26609_cfa-let-7e:mirbase
Length = 67
Score = 109 bits (55), Expect = 4e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 15 tgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacggcctccta 74
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 1 tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 60
Query: 75 gctttcc 81
|||||||
Sbjct: 61 gctttcc 67
>25676_xtr-let-7a:mirbase
Length = 89
Score = 69.9 bits (35), Expect = 3e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 12 ggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacggcctc 71
||||||||||| |||||||||||||||||| ||||| ||||||| ||| ||| |||||
Sbjct: 11 ggctgaggtagtaggttgtatagttgaggataacaccaaaggagataactgtacagcctc 70
Query: 72 ctagctttccc 82
||| |||||||
Sbjct: 71 ctatctttccc 81
>34525_fru-let-7a-1:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 15 tgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacggcctccta 74
|||||||| |||||||||||||||| |||||| ||||||| ||| ||| ||||||||
Sbjct: 6 tgaggtagtaggttgtatagttgagagtgacaccacaggagatgactgtacagcctccta 65
Query: 75 gctttccc 82
||||||||
Sbjct: 66 gctttccc 73
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 15 tgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacggcctccta 74
|||||||| |||||||||||||||| |||||| ||||||| ||| ||| ||||||||
Sbjct: 6 tgaggtagtaggttgtatagttgagagtgacaccacaggagataactgtacagcctccta 65
Query: 75 gctttccc 82
||||||||
Sbjct: 66 gctttccc 73
>34166_dre-let-7a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 cccccgggctgaggtaggaggttgtatagtt 36
||||| ||||||||||| |||||||||||||
Sbjct: 2 cccccaggctgaggtagtaggttgtatagtt 32
>27630_mml-let-7a-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 12 ggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacggcctc 71
||||||||||| ||||||||||||| || | ||| | |||||| ||| ||| |||||
Sbjct: 2 ggctgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctc 61
Query: 72 ctagctttcc 81
||||||||||
Sbjct: 62 ctagctttcc 71
>38846_lgi-let-7:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tgaggtaggaggttgtatagttgag 39
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>24642_bfl-let-7a-2:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tgaggtaggaggttgtatagttgag 39
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>32639_rno-let-7a-2:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 ggctgaggtaggaggttgtatagtt 36
||||||||||| |||||||||||||
Sbjct: 14 ggctgaggtagtaggttgtatagtt 38
>33098_rno-mir-3596a:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 12 ggctgaggtaggaggttgtatagtt 36
||||||||||| |||||||||||||
Sbjct: 91 ggctgaggtagtaggttgtatagtt 67
>34862_sko-let-7:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tgaggtaggaggttgtatagttgag 39
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>34958_isc-let-7:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tgaggtaggaggttgtatagttgag 39
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>38593_ppc-let-7:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 gctgaggtaggaggttgtatagtt 36
|||||||||| |||||||||||||
Sbjct: 15 gctgaggtagtaggttgtatagtt 38
