miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 5 cttgttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaat 64
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cttgttccactctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaat 64
Query: 65 attattgtgctgctttagtgtgacagggata 95
|||||||||||||||||||||||||||||||
Sbjct: 65 attattgtgctgctttagtgtgacagggata 95
>33131_bta-mir-16b:mirbase
Length = 93
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 1 catacttgttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacac 60
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 catacttgttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacac 60
Query: 61 caatattattgtgctgctttagtgtgacaggga 93
|||||||||||||||||||||| ||||||||||
Sbjct: 61 caatattattgtgctgctttagcgtgacaggga 93
>26947_eca-mir-16:mirbase
Length = 81
Score = 149 bits (75), Expect = 4e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 8 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 60
Query: 68 attgtgctgctttag 82
|||||||||||||||
Sbjct: 61 attgtgctgctttag 75
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 137 bits (69), Expect = 2e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 8 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 67
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattggcgtagtgaaatatatattaaacaccaatatt 60
Query: 68 attgtgctgctttagtgtgac 88
| |||||||||||||||||||
Sbjct: 61 actgtgctgctttagtgtgac 81
>33913_ssc-mir-16-1:mirbase
Length = 77
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 10 tccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattat 69
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
Query: 70 tgtgctgctttag 82
|||||||||||||
Sbjct: 61 tgtgctgctttag 73
>30149_ptr-mir-16-2:mirbase
Length = 80
Score = 127 bits (64), Expect = 2e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 9 ttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatta 68
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1 ttccactctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatatta 60
Query: 69 ttgtgctgctttagtgtgac 88
|||||||||||||||||||
Sbjct: 61 ctgtgctgctttagtgtgac 80
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 123 bits (62), Expect = 2e-29
Identities = 78/82 (95%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 8 gttccgctctagcagcacgtaaatattgg-cgtagtgaaataaatattaaacaccaatat 66
||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattgggcgtagtgaaatatatattaaacaccaatat 60
Query: 67 tattgtgctgctttagtgtgac 88
|| |||||||||||||||||||
Sbjct: 61 tactgtgctgctttagtgtgac 82
>26626_cfa-mir-16-2:mirbase
Length = 65
Score = 121 bits (61), Expect = 9e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatattattgtgctg 76
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgtagtgaaataaaaattaaacaccaatattattgtgctg 60
Query: 77 cttta 81
|||||
Sbjct: 61 cttta 65
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 121 bits (61), Expect = 9e-29
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 8 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 67
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattggcgtagtgaaatatgtattaaacaccaatatt 60
Query: 68 attgtgctgctttagtgtgac 88
| |||||||||| ||||||||
Sbjct: 61 actgtgctgcttcagtgtgac 81
>25895_gga-mir-16-2:mirbase
Length = 94
Score = 105 bits (53), Expect = 6e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 3 tacttgttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacacca 62
|||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||| |||
Sbjct: 3 tacttgttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaacccca 62
Query: 63 atattattgtgctgctt 79
|||||||||||||||||
Sbjct: 63 atattattgtgctgctt 79
>31429_oan-mir-16b:mirbase
Length = 101
Score = 89.7 bits (45), Expect = 3e-19
Identities = 82/94 (87%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 1 catacttgttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacac 60
||||||| || ||||||||||||||||||||||||| |||||| || | |||||| |
Sbjct: 5 catacttattacgctctagcagcacgtaaatattggtgtagtg----aagtcttaaaccc 60
Query: 61 caatattattgtgctgctttagtgtgacagggat 94
|||||||||||||||||||||| |||| ||||||
Sbjct: 61 caatattattgtgctgctttagcgtgatagggat 94
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 63.9 bits (32), Expect = 2e-11
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 8 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 67
||||||| ||||||||||||||||||||| || || ||| ||| || ||| ||||||||
Sbjct: 2 gttccgccctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatatt 60
Query: 68 attgtgctgctt 79
||||||||||||
Sbjct: 61 attgtgctgctt 72
>25894_gga-mir-16-1:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ctctagcagcacgtaaatattgg 36
|||||||||||||||||||||||
Sbjct: 11 ctctagcagcacgtaaatattgg 33
>26625_cfa-mir-16-1:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgt 23
>26948_eca-mir-16-2:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgt 23
>27334_mdo-mir-16:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27480_age-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27589_sla-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27652_mml-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28172_mne-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28260_ggo-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28362_hsa-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30044_ppa-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30148_ptr-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30753_ppy-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>31428_oan-mir-16a:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 29 tagcagcacgtaaatattggcgt 51
>31777_mmu-mir-16-1:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 16 tagcagcacgtaaatattggcgt 38
>33914_ssc-mir-16-2:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattggcgt 31
>27541_lla-mir-16:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcg 38
||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcg 35
>34206_dre-mir-16a:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 cgctctagcagcacgtaaatattgg 36
|||| ||||||||||||||||||||
Sbjct: 8 cgctttagcagcacgtaaatattgg 32
>25429_pma-mir-16:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>25700_xtr-mir-16a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25701_xtr-mir-16b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25896_gga-mir-16c:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 gctctagcagcacgtaaata 32
||||||||||||||||||||
Sbjct: 1 gctctagcagcacgtaaata 20
>26399_tgu-mir-16a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattgg 30
>26401_tgu-mir-16c:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 gctctagcagcacgtaaata 32
||||||||||||||||||||
Sbjct: 7 gctctagcagcacgtaaata 26
>31394_lca-mir-16:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>33130_bta-mir-16a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>34207_dre-mir-16b:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 39 tagcagcacgtaaatattgg 58
>34547_fru-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 13 tagcagcacgtaaatattgg 32
>34695_tni-mir-16:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
