miRNEST 2.0, an integrative microRNA resource :: BLAST
>40043_ath-MIR168a:mirbase
Length = 138
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 9 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctc 60
Query: 69 gtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactg 120
Query: 129 aatcggatcctcgaggtg 146
||||||||||||||||||
Sbjct: 121 aatcggatcctcgaggtg 138
>39832_aly-MIR168a:mirbase
Length = 155
Score = 268 bits (135), Expect = 1e-72
Identities = 144/147 (97%)
Strand = Plus / Plus
Query: 3 gagtctcaccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacac 62
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagtctcaccgtcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacac 60
Query: 63 agcctcgtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcat 122
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agcctcgtgactttaaaacctttattggtttgtgagcagggattggatcccgccttgcat 120
Query: 123 caactgaatcggatcctcgaggtgtaa 149
|||||||||||||||| ||||||||||
Sbjct: 121 caactgaatcggatccccgaggtgtaa 147
>40271_bna-MIR168:mirbase
Length = 133
Score = 67.9 bits (34), Expect = 2e-12
Identities = 90/107 (84%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 26 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 85
|||||||||||||||||||||| ||| ||||||||| ||| |||| |||| || |
Sbjct: 18 tcgcttggtgcaggtcgggaactgatt-ggctgacaccgccacgtggcttt----ccatg 72
Query: 86 attggtttgtgagcagggattggatcccgccttgcatcaactgaatc 132
|||| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 73 gttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
>41348_ptc-MIR168b:mirbase
Length = 136
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 104 attggatcccgccttgcatcaactgaatcgga 135
||||||||||||||||||||||||||||||||
Sbjct: 103 attggatcccgccttgcatcaactgaatcgga 134
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaaccaattcggc 56
|||||||||||||||||||||||| |||||||
Sbjct: 9 attcgcttggtgcaggtcgggaactgattcggc 41
>41347_ptc-MIR168a:mirbase
Length = 160
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 104 attggatcccgccttgcatcaactgaatcgga 135
||||||||||||||||||||||||||||||||
Sbjct: 127 attggatcccgccttgcatcaactgaatcgga 158
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 23 gattcgcttggtgcaggtcgggaaccaattcggc 56
||||||||||||||||||||||||| |||||||
Sbjct: 8 gattcgcttggtgcaggtcgggaactgattcggc 41
>41215_crt-MIR168:mirbase
Length = 201
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 104 attggatcccgccttgcatcaactgaatcgga 135
||||||||||||||||||||||||||||||||
Sbjct: 136 attggatcccgccttgcatcaactgaatcgga 167
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||||
Sbjct: 19 attcgcttggtgcaggtcgggaac 42
>41210_ccl-MIR168:mirbase
Length = 176
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 104 attggatcccgccttgcatcaactgaatcgga 135
||||||||||||||||||||||||||||||||
Sbjct: 135 attggatcccgccttgcatcaactgaatcgga 166
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||||
Sbjct: 18 attcgcttggtgcaggtcgggaac 41
>41101_tcc-MIR168:mirbase
Length = 167
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 104 attggatcccgccttgcatcaactgaatcgga 135
||||||||||||||||||||||||||||||||
Sbjct: 120 attggatcccgccttgcatcaactgaatcgga 151
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||||
Sbjct: 19 attcgcttggtgcaggtcgggaac 42
>40448_gma-MIR168:mirbase
Length = 125
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 104 attggatcccgccttgcatcaactgaatcgga 135
||||||||||||||||||||||||||||||||
Sbjct: 81 attggatcccgccttgcatcaactgaatcgga 112
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaacc 48
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>40355_rco-MIR168:mirbase
Length = 131
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 104 attggatcccgccttgcatcaactgaatcg 133
||||||||||||||||||||||||||||||
Sbjct: 99 attggatcccgccttgcatcaactgaatcg 128
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaac 47
||||||||||||||||||||||||
Sbjct: 4 attcgcttggtgcaggtcgggaac 27
>40044_ath-MIR168b:mirbase
Length = 124
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 19 ctcggattcgcttggtgcaggtcgggaac 47
|||||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaac 40
>39833_aly-MIR168b:mirbase
Length = 176
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 19 ctcggattcgcttggtgcaggtcgggaac 47
|||||||||||||||||||||||||||||
Sbjct: 36 ctcggattcgcttggtgcaggtcgggaac 64
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 108 gatcccgccttgcatcaactgaatcgga 135
||||||| |||| |||||||||||||||
Sbjct: 110 gatcccgtcttgtatcaactgaatcgga 137
>41596_vvi-MIR168:mirbase
Length = 132
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 108 gatcccgccttgcatcaactgaatcgga 135
||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcgga 126
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 attcgcttggtgcaggtcgggaacc 48
|||||||||||||||||||||||||
Sbjct: 9 attcgcttggtgcaggtcgggaacc 33
>42742_zma-MIR168b:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 107 ggatcccgccttgcatcaactgaatcgga 135
||||||||||||||||||| |||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcgga 91
>42741_zma-MIR168a:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 107 ggatcccgccttgcatcaactgaatcgga 135
||||||||||||||| ||| |||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcgga 91
>42470_ssp-MIR168a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 107 ggatcccgccttgcatcaactgaatcgga 135
||||||||||||||| ||| |||||||||
Sbjct: 60 ggatcccgccttgcaccaagtgaatcgga 88
>42460_sof-MIR168b:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 107 ggatcccgccttgcatcaactgaatcgga 135
||||||||||||||| ||| |||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcgga 90
>42459_sof-MIR168a:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 107 ggatcccgccttgcatcaactgaatcgga 135
||||||||||||||| ||| |||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcgga 91
>41962_osa-MIR168a:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 107 ggatcccgccttgcatcaactgaatcgga 135
||||||||||||||| ||| |||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcgga 83
>41961_osa-MIR168a:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 107 ggatcccgccttgcatcaactgaatcgga 135
||||||||||||||| ||| |||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcgga 83
>41888_hvu-MIR168:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 107 ggatcccgccttgcatcaactgaatcgga 135
||||||||||||||| ||| |||||||||
Sbjct: 66 ggatcccgccttgcaccaagtgaatcgga 94
>41887_hvu-MIR168:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 107 ggatcccgccttgcatcaactgaatcgga 135
||||||||||||||| ||| |||||||||
Sbjct: 66 ggatcccgccttgcaccaagtgaatcgga 94
>41753_bdi-MIR168:mirbase
Length = 136
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 107 ggatcccgccttgcatcaactgaatcgga 135
||||||||||||||| ||| |||||||||
Sbjct: 75 ggatcccgccttgcaccaagtgaatcgga 103
