miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32689_rno-mir-30b:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 ccgagtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgagtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggat 60
Query: 61 gtggatgtttacgtcagctgtcttgga 87
|||||||||||||||||||||||||||
Sbjct: 61 gtggatgtttacgtcagctgtcttgga 87
>31807_mmu-mir-30b:mirbase
Length = 96
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 4 agtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtg 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9 agtttcagttcatgtaaacatcctacactcagctgtcatacatgcgttggctgggatgtg 68
Query: 64 gatgtttacgtcagctgtcttgga 87
||||||||||||||||||||||||
Sbjct: 69 gatgtttacgtcagctgtcttgga 92
>27682_mml-mir-30b:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 4 agtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtg 63
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 64 gatgtttacgtcagctgtcttgga 87
||||||||| ||||||| ||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>28191_mne-mir-30b:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 4 agtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtg 63
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 64 gatgtttacgtcagctgtcttgga 87
||||||||| ||||||| ||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>28392_hsa-mir-30b:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 4 agtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtg 63
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 64 gatgtttacgtcagctgtcttgga 87
||||||||| ||||||| ||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>30067_ppa-mir-30b:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 4 agtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtg 63
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 64 gatgtttacgtcagctgtcttgga 87
||||||||| ||||||| ||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>30178_ptr-mir-30b:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 4 agtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtg 63
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 64 gatgtttacgtcagctgtcttgga 87
||||||||| ||||||| ||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>30783_ppy-mir-30b:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 4 agtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtg 63
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct: 5 agtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 64 gatgtttacgtcagctgtcttgga 87
||||||||| ||||||| ||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>27495_age-mir-30b:mirbase
Length = 88
Score = 117 bits (59), Expect = 1e-27
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 1 ccgagtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggat 60
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct: 2 ccgagtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagag 61
Query: 61 gtggatgtttacgtcagctgtcttgga 87
|||||||||||| ||||||| ||||||
Sbjct: 62 gtggatgtttacttcagctgacttgga 88
>27555_lla-mir-30b:mirbase
Length = 88
Score = 117 bits (59), Expect = 1e-27
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 1 ccgagtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggat 60
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct: 2 ccgagtttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagag 61
Query: 61 gtggatgtttacgtcagctgtcttgga 87
|||||||||||| ||||||| ||||||
Sbjct: 62 gtggatgtttacttcagctgacttgga 88
>28280_ggo-mir-30b:mirbase
Length = 88
Score = 111 bits (56), Expect = 8e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 4 agtttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtg 63
|||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct: 5 agttccagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtg 64
Query: 64 gatgtttacgtcagctgtcttgga 87
||||||||| ||||||| ||||||
Sbjct: 65 gatgtttacttcagctgacttgga 88
>33165_bta-mir-30b:mirbase
Length = 88
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 6 tttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtgga 65
|||||||||||||||||||||||||||||||||| | ||| |||| |||||||| |||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
Query: 66 tgtttacgtcagctgtcttgga 87
||||||| ||||||| ||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>33166_bta-mir-30b:mirbase
Length = 88
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 6 tttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtgga 65
|||||||||||||||||||||||||||||||||| | ||| |||| |||||||| |||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
Query: 66 tgtttacgtcagctgtcttgga 87
||||||| ||||||| ||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>33940_ssc-mir-30b:mirbase
Length = 76
Score = 101 bits (51), Expect = 8e-23
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 6 tttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtgga 65
||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
Query: 66 tgtttacgtcagctg 80
||||||| |||||||
Sbjct: 61 tgtttacttcagctg 75
>33941_ssc-mir-30b:mirbase
Length = 76
Score = 101 bits (51), Expect = 8e-23
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 6 tttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtgga 65
||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
Query: 66 tgtttacgtcagctg 80
||||||| |||||||
Sbjct: 61 tgtttacttcagctg 75
>26654_cfa-mir-30b:mirbase
Length = 60
Score = 73.8 bits (37), Expect = 2e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgtcatacatgagttggctgggatgtggatgtttac 72
|||||||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtagtacatggattggctgggaggtggatgtttac 57
>26975_eca-mir-30b:mirbase
Length = 58
Score = 73.8 bits (37), Expect = 2e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgtcatacatgagttggctgggatgtggatgtttac 72
|||||||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtactacatggattggctgggaggtggatgtttac 57
>31451_oan-mir-30b:mirbase
Length = 111
Score = 61.9 bits (31), Expect = 7e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 ccgagtttcagttcatgtaaacatcctacactcagctgt 39
||||||| ||||||||||||||||||||||||||||||
Sbjct: 14 ccgagttcgagttcatgtaaacatcctacactcagctgt 52
>25917_gga-mir-30b:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 agttcatgtaaacatcctacactcagct 37
||||| ||||||||||||||||||||||
Sbjct: 10 agttcctgtaaacatcctacactcagct 37
>34248_dre-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgt 39
||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagctgt 39
>34573_fru-mir-30b:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgt 39
||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagctgt 39
>34720_tni-mir-30b:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgt 39
||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactcagctgt 30
>25733_xtr-mir-30b:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 atgtaaacatcctacactcagct 37
|||||||||||||||||||||||
Sbjct: 11 atgtaaacatcctacactcagct 33
