miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31809_mmu-mir-30c-2:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 gagtgacagatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggag 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagtgacagatattgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggag 60
Query: 61 aaggctgtttactctctctgcctt 84
||||||||||||||||||||||||
Sbjct: 61 aaggctgtttactctctctgcctt 84
>33943_ssc-mir-30c-2:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 5 gacagatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaagg 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gacagatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaagg 60
Query: 65 ctgtttactctctctgcctt 84
||||||||||||||||||||
Sbjct: 61 ctgtttactctctctgcctt 80
>27684_mml-mir-30c-2:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 8 agatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctg 67
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 68 tttactctctct 79
||||||||||||
Sbjct: 61 tttactctctct 72
>27556_lla-mir-30c:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 8 agatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctg 67
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 68 tttactct 75
||||||||
Sbjct: 61 tttactct 68
>28192_mne-mir-30c:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 8 agatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctg 67
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 68 tttactct 75
||||||||
Sbjct: 61 tttactct 68
>28394_hsa-mir-30c-2:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 8 agatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctg 67
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 68 tttactct 75
||||||||
Sbjct: 61 tttactct 68
>30180_ptr-mir-30c-2:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 8 agatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctg 67
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 68 tttactct 75
||||||||
Sbjct: 61 tttactct 68
>26425_tgu-mir-30c:mirbase
Length = 72
Score = 125 bits (63), Expect = 5e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgtttact 73
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 74 ctctctgcctt 84
|||||||||||
Sbjct: 61 ctctctgcctt 71
>26426_tgu-mir-30c:mirbase
Length = 72
Score = 125 bits (63), Expect = 5e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgtttact 73
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 74 ctctctgcctt 84
|||||||||||
Sbjct: 61 ctctctgcctt 71
>33170_bta-mir-30f:mirbase
Length = 84
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 7 cagatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggct 66
||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 7 cagatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggct 66
Query: 67 gtttactctctctgcctt 84
||||||||||||||||||
Sbjct: 67 gtttactctctctgcctt 84
>31452_oan-mir-30c:mirbase
Length = 122
Score = 119 bits (60), Expect = 3e-28
Identities = 79/84 (94%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 gagtgacagatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggag 60
||||||||| ||||||||||||||||||||||||||||| | | || |||||||||||||
Sbjct: 18 gagtgacaggtactgtaaacatcctacactctcagctgt-agatgtgagaaagctgggag 76
Query: 61 aaggctgtttactctctctgcctt 84
||||||||||||||||||||||||
Sbjct: 77 aaggctgtttactctctctgcctt 100
>25919_gga-mir-30c-2:mirbase
Length = 72
Score = 115 bits (58), Expect = 5e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 11 tactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgttt 70
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
Query: 71 actctc 76
||||||
Sbjct: 64 actctc 69
>26656_cfa-mir-30c-2:mirbase
Length = 62
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgtttact 73
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 60
Query: 74 ct 75
||
Sbjct: 61 ct 62
>26977_eca-mir-30c-2:mirbase
Length = 60
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgtttact 73
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtgagaaagctgggagaaggctgtttact 60
>25735_xtr-mir-30c-2:mirbase
Length = 78
Score = 97.6 bits (49), Expect = 1e-21
Identities = 70/76 (92%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 5 gacagatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaagg 64
|||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||
Sbjct: 5 gacagatactgtaaacatcctacactctcagctgtggaaa--tacaaagctgggggaagg 62
Query: 65 ctgtttactctctctg 80
||||||||||||||||
Sbjct: 63 ctgtttactctctctg 78
>25734_xtr-mir-30c-1:mirbase
Length = 89
Score = 65.9 bits (33), Expect = 4e-12
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgtttact 73
||||||||||||||||||||||||||||| | |||| |||||||||||| ||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaaca-taaggtggctgggagaagggtgtttact 75
Query: 74 c 74
|
Sbjct: 76 c 76
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtgaa 42
|||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaa 45
>26655_cfa-mir-30c-1:mirbase
Length = 61
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtga 28
>26976_eca-mir-30c:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtga 44
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtga 44
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtga 44
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactctcagctgtga 43
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtga 44
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtga 44
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtga 44
>33167_bta-mir-30c:mirbase
Length = 105
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 26 tgtaaacatcctacactctcagctgtga 53
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtga 37
>34249_dre-mir-30c:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctg 38
|||||||||||||||||||||||||
Sbjct: 11 tgtaaacatcctacactctcagctg 35
>25462_pma-mir-30g:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
|||||||||||| |||||||||||||||
Sbjct: 12 tgtaaacatccttcactctcagctgtga 39
>25460_pma-mir-30f-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtg 36
>25461_pma-mir-30f-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctg 38
|||||||| ||||||||||||||||
Sbjct: 11 tgtaaacaccctacactctcagctg 35
>34574_fru-mir-30c:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctc 33
||||||||||||||||||||
Sbjct: 9 tgtaaacatcctacactctc 28
>34721_tni-mir-30c:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctc 33
||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctc 29
>25917_gga-mir-30b:mirbase
Length = 87
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 13 ctgtaaacatcctacactc 31
|||||||||||||||||||
Sbjct: 15 ctgtaaacatcctacactc 33
>34248_dre-mir-30b:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 13 ctgtaaacatcctacactc 31
|||||||||||||||||||
Sbjct: 15 ctgtaaacatcctacactc 33
