miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33042_rno-mir-3554:mirbase
Length = 118
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 1 tgctcctgaaacttggaactggagaggaggcaagatgctggcatagctgttgaactgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tgctcctgaaacttggaactggagaggaggcaagatgctggcatagctgttgaactgaga 53
Query: 61 acctgctatgccaacatattgccatctttcctgtctgacagcagct 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 acctgctatgccaacatattgccatctttcctgtctgacagcagct 7
>31812_mmu-mir-31:mirbase
Length = 106
Score = 194 bits (98), Expect = 9e-51
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 1 tgctcctgaaacttggaactggagaggaggcaagatgctggcatagctgttgaactgaga 60
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctcctgtaactcggaactggagaggaggcaagatgctggcatagctgttgaactgaga 60
Query: 61 acctgctatgccaacatattgccatctttcctgtctgacagcagct 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acctgctatgccaacatattgccatctttcctgtctgacagcagct 106
>33171_bta-mir-31:mirbase
Length = 94
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 4 tcctgaaacttggaactggagaggaggcaagatgctggcatagctgttgaactgagaacc 63
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 tcctgtaacttggaactggagaggaggcaagatgctggcatagctgttgaactgcgaacc 60
Query: 64 tgctatgccaacatattgccatct 87
||||||||||||||||||||||||
Sbjct: 61 tgctatgccaacatattgccatct 84
>27357_mdo-mir-31:mirbase
Length = 87
Score = 139 bits (70), Expect = 5e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ctggagaggaggcaagatgttggcatagctgttgaactgagaacctgctatgccaacata 62
Query: 79 ttgccatctttcctgtct 96
|||||||||||| |||||
Sbjct: 63 ttgccatctttcttgtct 80
>26980_eca-mir-31:mirbase
Length = 67
Score = 133 bits (67), Expect = 3e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 21 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 60
Query: 81 gccatct 87
|||||||
Sbjct: 61 gccatct 67
>27687_mml-mir-31:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 21 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 80
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 81 gccatctttcc 91
|||||||||||
Sbjct: 61 gccatctttcc 71
>28194_mne-mir-31:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 21 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 80
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 81 gccatctttcc 91
|||||||||||
Sbjct: 61 gccatctttcc 71
>28282_ggo-mir-31:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 21 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 80
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 81 gccatctttcc 91
|||||||||||
Sbjct: 61 gccatctttcc 71
>28397_hsa-mir-31:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 21 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 80
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 81 gccatctttcc 91
|||||||||||
Sbjct: 61 gccatctttcc 71
>30069_ppa-mir-31:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 21 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 80
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 81 gccatctttcc 91
|||||||||||
Sbjct: 61 gccatctttcc 71
>30183_ptr-mir-31:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 21 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 80
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 81 gccatctttcc 91
|||||||||||
Sbjct: 61 gccatctttcc 71
>30787_ppy-mir-31:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 21 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 80
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 81 gccatctttcc 91
|||||||||||
Sbjct: 61 gccatctttcc 71
>26429_tgu-mir-31:mirbase
Length = 109
Score = 117 bits (59), Expect = 2e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||
Sbjct: 16 ctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacata 75
Query: 79 ttgccatctttcctgtctg 97
||| |||||||||||||||
Sbjct: 76 ttgtcatctttcctgtctg 94
>26659_cfa-mir-31:mirbase
Length = 59
Score = 117 bits (59), Expect = 2e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 28 aggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatattgccatc 86
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatattgccatc 59
>25922_gga-mir-31:mirbase
Length = 94
Score = 101 bits (51), Expect = 1e-22
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
|||||| |||||||||||| ||||||||||||| | || | |||||||||||||||||||
Sbjct: 16 ctggaggggaggcaagatgttggcatagctgttaacctaaaaacctgctatgccaacata 75
Query: 79 ttgccatctttcctgtctg 97
||| |||||||||||||||
Sbjct: 76 ttgtcatctttcctgtctg 94
>31456_oan-mir-31:mirbase
Length = 136
Score = 85.7 bits (43), Expect = 6e-18
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
|||||||| |||||||||| ||||||||||||||| | ||||||||||||||| ||||
Sbjct: 8 ctggagagaaggcaagatgttggcatagctgttgagttaagaacctgctatgccgacatg 67
Query: 79 ttgccatctttcctgtctgacagcagc 105
||| |||||||| ||||| |||||||
Sbjct: 68 ttgtcatctttcttgtctatcagcagc 94
>25738_xtr-mir-31:mirbase
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 67/76 (88%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 22 gagaggaggcaagatgctggcatagctgttg-aactgagaacctgctatgccaacatatt 80
|||||||||||||||| |||||||||||||| | |||| |||| | | ||||||| ||||
Sbjct: 11 gagaggaggcaagatgttggcatagctgttgcatctga-aaccagttgtgccaacctatt 69
Query: 81 gccatctttcctgtct 96
|||||||||| |||||
Sbjct: 70 gccatctttcttgtct 85
>39077_sme-mir-31b-3:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 aggcaagatgctggcatagctg 49
||||||||||||||||||||||
Sbjct: 3 aggcaagatgctggcatagctg 24
>39076_sme-mir-31b-2:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 aggcaagatgctggcatagctg 49
||||||||||||||||||||||
Sbjct: 3 aggcaagatgctggcatagctg 24
>39075_sme-mir-31b-1:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 aggcaagatgctggcatagctg 49
||||||||||||||||||||||
Sbjct: 14 aggcaagatgctggcatagctg 35
>34869_sko-mir-31:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 ggaggcaagatgctggcatagctgtt 51
|||||||||||| |||||||||||||
Sbjct: 19 ggaggcaagatgttggcatagctgtt 44
