miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31814_mmu-mir-33:mirbase
Length = 69
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgc 62
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgttctggcaatacctgtgcaatgtttccacagtgc 62
Query: 63 atcacgg 69
|||||||
Sbjct: 63 atcacgg 69
>33173_bta-mir-33a:mirbase
Length = 69
Score = 109 bits (55), Expect = 2e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcat 64
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcat 64
Query: 65 cac 67
|||
Sbjct: 65 cac 67
>26661_cfa-mir-33:mirbase
Length = 61
Score = 105 bits (53), Expect = 4e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcatc 65
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtttccacagtgcatc 60
Query: 66 a 66
|
Sbjct: 61 a 61
>26982_eca-mir-33a:mirbase
Length = 69
Score = 105 bits (53), Expect = 4e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgc 62
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgttctggcggtacccatgcaatgtttccacagtgc 62
Query: 63 atcac 67
|||||
Sbjct: 63 atcac 67
>28284_ggo-mir-33:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgc 62
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgc 62
Query: 63 atcac 67
|||||
Sbjct: 63 atcac 67
>28399_hsa-mir-33a:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgc 62
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgc 62
Query: 63 atcac 67
|||||
Sbjct: 63 atcac 67
>30071_ppa-mir-33:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgc 62
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgc 62
Query: 63 atcac 67
|||||
Sbjct: 63 atcac 67
>30185_ptr-mir-33a:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgc 62
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgc 62
Query: 63 atcac 67
|||||
Sbjct: 63 atcac 67
>30789_ppy-mir-33:mirbase
Length = 69
Score = 93.7 bits (47), Expect = 1e-20
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcat 64
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
Query: 65 cac 67
|||
Sbjct: 65 cac 67
>27689_mml-mir-33a:mirbase
Length = 69
Score = 87.7 bits (44), Expect = 9e-19
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcat 64
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
>28196_mne-mir-33:mirbase
Length = 69
Score = 87.7 bits (44), Expect = 9e-19
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcat 64
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
>25924_gga-mir-33:mirbase
Length = 69
Score = 77.8 bits (39), Expect = 9e-16
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtt 52
|||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgtt 52
>31460_oan-mir-33b:mirbase
Length = 85
Score = 77.8 bits (39), Expect = 9e-16
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcat 64
||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||
Sbjct: 14 gtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagtgcat 72
>31461_oan-mir-33b:mirbase
Length = 85
Score = 77.8 bits (39), Expect = 9e-16
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcat 64
||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||
Sbjct: 14 gtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagtgcat 72
>26431_tgu-mir-33:mirbase
Length = 70
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgca 63
||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct: 11 gtgcattgtagttgcattgcatgttgtggcagtgactgtgcaatgtttctgcagtgca 68
>25740_xtr-mir-33a:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgt 29
>37721_tca-mir-33:mirbase
Length = 102
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgtt 30
||||||||||||||||||||||||||
Sbjct: 24 ggtgcattgtagttgcattgcatgtt 49
>37722_tca-mir-33:mirbase
Length = 102
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgtt 30
||||||||||||||||||||||||||
Sbjct: 24 ggtgcattgtagttgcattgcatgtt 49
>38738_cte-mir-33:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 tggtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||||
Sbjct: 19 tggtgcattgtagttgcattgcatg 43
>24657_bfl-mir-33-1:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 6 ggtgcattgtagttgcattgcatgt 30
>24658_bfl-mir-33-2:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 15 ggtgcattgtagttgcattgcatgt 39
>27359_mdo-mir-33:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcat 64
|||||||||||||||||||||| || || | | || ||||||||||||||||||||||
Sbjct: 1 ggtgcattgtagttgcattgcacgtcgtgtccgggcc-gtgcaatgtttccacagtgcat 59
Query: 65 c 65
|
Sbjct: 60 c 60
>38857_lgi-mir-33:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 tggtgcattgtagttgcattgcat 27
||||||||||||||||||||||||
Sbjct: 19 tggtgcattgtagttgcattgcat 42
>31458_oan-mir-33a:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgt 29
||||||||||||||||||||||||
Sbjct: 22 gtgcattgtagttgcattgcatgt 45
>31459_oan-mir-33a:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgt 29
||||||||||||||||||||||||
Sbjct: 22 gtgcattgtagttgcattgcatgt 45
>35357_ame-mir-33:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatg 53
>37644_nvi-mir-33:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatg 53
>25464_pma-mir-33a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattg 24
||||||||||||||||||||||
Sbjct: 13 gtggtgcattgtagttgcattg 34
>25741_xtr-mir-33b:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tggtgcattgtagttgcattgcatgt 29
||||||||||| ||||||||||||||
Sbjct: 4 tggtgcattgttgttgcattgcatgt 29
>35183_aae-mir-33:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 8 ggtgcattgtagttgcattgca 29
>36014_cqu-mir-33:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 2 ggtgcattgtagttgcattgca 23
>24815_cin-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattgca 36
>35004_dpu-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgca 41
>35530_bmo-mir-33:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 11 gtgcattgtagttgcattgca 31
>34814_spu-mir-33:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 tggtgcattgtagttgcattgcat 27
||||||||||| ||||||||||||
Sbjct: 19 tggtgcattgtcgttgcattgcat 42
