miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31816_mmu-mir-34b:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>31817_mmu-mir-34b:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>26985_eca-mir-34b:mirbase
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctggagcttacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>26986_eca-mir-34b:mirbase
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctggagcttacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>27692_mml-mir-34b:mirbase
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
|||||||||||||||||||||| |||||||||||||| || |||| | ||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtcattagctgattgtactgtggtggttacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>28402_hsa-mir-34b:mirbase
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
|||||||||||||||||||||| |||||||||||||| || |||| | ||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtcattagctgattgtactgtggtggttacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>30188_ptr-mir-34b:mirbase
Length = 83
Score = 125 bits (63), Expect = 5e-30
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 2 tgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaact 61
||||||||||||||||||||| |||||||||||||| || |||| | |||||||||||||
Sbjct: 1 tgctcggtttgtaggcagtgtcattagctgattgtactgtggtggttacaatcactaact 60
Query: 62 ccactgccatcaaaacaaggcac 84
|||||||||||||||||||||||
Sbjct: 61 ccactgccatcaaaacaaggcac 83
>26664_cfa-mir-34b:mirbase
Length = 84
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
|||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtcctctgctgcttacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>30792_ppy-mir-34b:mirbase
Length = 84
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
|||||||||||||||||||||| |||||||||||||| || | || | ||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtcattagctgattgtactgtgatggttacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>33176_bta-mir-34b:mirbase
Length = 84
Score = 103 bits (52), Expect = 2e-23
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtagtgcggtgctgacaatcactaac 60
||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctcatgcttacaatcactagt 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>25926_gga-mir-34b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 49 acaatcactaactccactgccatcaaaacaaggcac 84
||||||||||| | ||||||||||||||||||||||
Sbjct: 49 acaatcactaaattcactgccatcaaaacaaggcac 84
>26434_tgu-mir-34c-1:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 49 acaatcactaactccactgccatcaaaacaag 80
||||||||||||| |||||||| |||||||||
Sbjct: 46 acaatcactaacttcactgccaccaaaacaag 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 ggtttgtaggcagtgtaattagctgattgt 36
|||||| |||||||||| ||||||||||||
Sbjct: 4 ggtttgcaggcagtgtagttagctgattgt 33
>26435_tgu-mir-34c-2:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 49 acaatcactaactccactgccatcaaaacaag 80
||||||||||||| |||||||| |||||||||
Sbjct: 46 acaatcactaacttcactgccaccaaaacaag 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 ggtttgtaggcagtgtaattagctgattgt 36
|||||| |||||||||| ||||||||||||
Sbjct: 4 ggtttgcaggcagtgtagttagctgattgt 33
>25743_xtr-mir-34b-1:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcagtgtaattagctgattgt 36
|||||||||| ||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgt 35
>25744_xtr-mir-34b-2:mirbase
Length = 67
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcagtgtaattagctgattgt 36
|||||||||| ||||||||||||
Sbjct: 4 aggcagtgtagttagctgattgt 26
>25745_xtr-mir-34b-3:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcagtgtaattagctgattgt 36
|||||||||| ||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgt 35
>25746_xtr-mir-34b-4:mirbase
Length = 67
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcagtgtaattagctgattgt 36
|||||||||| ||||||||||||
Sbjct: 4 aggcagtgtagttagctgattgt 26
>26987_eca-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>28403_hsa-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>28404_hsa-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>30189_ptr-mir-34c:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 11 taggcagtgtagttagctgattg 33
>30793_ppy-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>30794_ppy-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>31462_oan-mir-34:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 20 taggcagtgtagttagctgattg 42
>31818_mmu-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>32699_rno-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>33177_bta-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>33949_ssc-mir-34c:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgtaattagctgattg 35
||||||||||| |||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
