miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33180_bta-mir-92b:mirbase
Length = 96
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 4 gggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 72
Query: 64 cccggcctccggccccctcg 83
||||||||||||||||||||
Sbjct: 73 cccggcctccggccccctcg 92
>31821_mmu-mir-92b:mirbase
Length = 83
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 1 ggtgggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcact 60
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgggcgggagggacgggacgtggtgcagtgttgttctttcccctgccaatattgcact 60
Query: 61 cgtcccggcctccggccccctcg 83
|||||||||||||||||||||||
Sbjct: 61 cgtcccggcctccggccccctcg 83
>33952_ssc-mir-92b:mirbase
Length = 80
Score = 145 bits (73), Expect = 6e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 4 gggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 62
Query: 64 cccggcctccggccccc 80
|||||||||||||||||
Sbjct: 63 cccggcctccggccccc 79
>33953_ssc-mir-92b:mirbase
Length = 80
Score = 145 bits (73), Expect = 6e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 4 gggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gggcgggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 62
Query: 64 cccggcctccggccccc 80
|||||||||||||||||
Sbjct: 63 cccggcctccggccccc 79
>27697_mml-mir-92b:mirbase
Length = 96
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 4 gggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 63
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 13 gggcgggagggacgggacgcggtgcagtgttgttctttcccccgccaatattgcactcgt 72
Query: 64 cccggcctccggccccc 80
|||||||||||||||||
Sbjct: 73 cccggcctccggccccc 89
>26990_eca-mir-92b:mirbase
Length = 75
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 4 gggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 63
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gggcgggagggacgggacgcggtgcagtgttgttctttcccccgccaatattgcactcgt 60
Query: 64 cccggcctccggccc 78
|||||||||||||||
Sbjct: 61 cccggcctccggccc 75
>28407_hsa-mir-92b:mirbase
Length = 96
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 4 gggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 63
|||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 13 gggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaatattgcactcgt 72
Query: 64 cccggcctccggccccc 80
|||||||||||||||||
Sbjct: 73 cccggcctccggccccc 89
>30797_ppy-mir-92b:mirbase
Length = 96
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 4 gggcaggagggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgt 63
|||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 13 gggcgggagggacgggacgcggtgcagtgttgttttttcccccgccaatattgcactcgt 72
Query: 64 cccggcctccggcccc 79
||||||||||||||||
Sbjct: 73 cccggcctccggcccc 88
>26668_cfa-mir-92b:mirbase
Length = 63
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 11 agggacgggacgcggtgcagtgttgttctttcccctgccaatattgcactcgtcccggcc 70
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1 agggacgggacgcggtgcagtgttgttctctcccccgccaatattgcactcgtcccggcc 60
Query: 71 tcc 73
|||
Sbjct: 61 tcc 63
>25749_xtr-mir-92b:mirbase
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 25 gtgcagtgttgttctttcccctgccaatattgcactcgtcccggcctcc 73
||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 21 gtgcactgttgtcctttctcctgccaatattgcactcgtcccggcctcc 69
>34258_dre-mir-92b:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 4e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 25 gtgcagtgttgttctttcccctgccaatattgcactcgtcccggcctcc 73
|||||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 29 gtgcagtgttgttcaatctcccgccaatattgcactcgtcccggcctcc 77
>34875_sko-mir-92c:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 aatattgcactcgtcccggcct 71
||||||||||||||||||||||
Sbjct: 59 aatattgcactcgtcccggcct 80
>34949_xbo-mir-92a:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 aatattgcactcgtcccggcct 71
||||||||||||||||||||||
Sbjct: 48 aatattgcactcgtcccggcct 69
>34820_spu-mir-92c:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 51 atattgcactcgtcccggcct 71
|||||||||||||||||||||
Sbjct: 60 atattgcactcgtcccggcct 80
>38110_bma-mir-92:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 51 atattgcactcgtcccggcct 71
|||||||||||||||||||||
Sbjct: 66 atattgcactcgtcccggcct 86
>25350_odi-mir-92a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tattgcactcgtcccggcct 71
||||||||||||||||||||
Sbjct: 66 tattgcactcgtcccggcct 85
>25466_pma-mir-92a:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tattgcactcgtcccggcct 71
||||||||||||||||||||
Sbjct: 49 tattgcactcgtcccggcct 68
>24669_bfl-mir-92b:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 attgcactcgtcccggcct 71
|||||||||||||||||||
Sbjct: 62 attgcactcgtcccggcct 80
>34818_spu-mir-92a:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 caatattgcactcgtcccggcct 71
|||||||||||| ||||||||||
Sbjct: 58 caatattgcacttgtcccggcct 80
>35008_dpu-mir-92:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 attgcactcgtcccggcct 71
|||||||||||||||||||
Sbjct: 62 attgcactcgtcccggcct 80
>35363_ame-mir-92a:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 caatattgcactcgtcccggcct 71
|||||||||||| ||||||||||
Sbjct: 60 caatattgcacttgtcccggcct 82
>37577_ngi-mir-92a:mirbase
Length = 94
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 caatattgcactcgtcccggcct 71
|||||||||||| ||||||||||
Sbjct: 54 caatattgcacttgtcccggcct 76
>37609_nlo-mir-92a:mirbase
Length = 93
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 caatattgcactcgtcccggcct 71
|||||||||||| ||||||||||
Sbjct: 54 caatattgcacttgtcccggcct 76
>37647_nvi-mir-92a:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 caatattgcactcgtcccggcct 71
|||||||||||| ||||||||||
Sbjct: 59 caatattgcacttgtcccggcct 81
