miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31824_mmu-mir-98:mirbase
Length = 108
Score = 198 bits (100), Expect = 6e-52
Identities = 106/108 (98%)
Strand = Plus / Plus
Query: 1 ctgcacatgctggggtgaggtagtaagttgtattgttgtggggtagggattttaggcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcacatgctggggtgaggtagtaagttgtattgttgtggggtagggattttaggcccc 60
Query: 61 aataagaagataactatacaacttactactttccctggtgtgtggcat 108
| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61 agtaagaagataactatacaacttactactttccttggtgtgtggcat 108
>26994_eca-mir-98:mirbase
Length = 119
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 13 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagata 72
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 19 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagata 78
Query: 73 actatacaacttactactttccctggtgtgtggcat 108
||||||||||||||||||||||||||||||||||||
Sbjct: 79 actatacaacttactactttccctggtgtgtggcat 114
>33184_bta-mir-98:mirbase
Length = 119
Score = 180 bits (91), Expect = 1e-46
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 1 ctgcacatgctggggtgaggtagtaagttgtattgttgtggggtagggattttaggcccc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ctgctcatgctggggtgaggtagtaagttgtattgttgtggggtagggattttaggcccc 66
Query: 61 aataagaagataactatacaacttactactttccctggtgtgt 103
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aatttgaagataactatacaacttactactttccctggtgtgt 109
>28411_hsa-mir-98:mirbase
Length = 119
Score = 174 bits (88), Expect = 8e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 13 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagata 72
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 19 gggtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagata 78
Query: 73 actatacaacttactactttccctggtgtgtggcat 108
||||||||||||||||||||||||||||||||||||
Sbjct: 79 actatacaacttactactttccctggtgtgtggcat 114
>30195_ptr-mir-98:mirbase
Length = 119
Score = 174 bits (88), Expect = 8e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 13 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagata 72
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 19 gggtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagata 78
Query: 73 actatacaacttactactttccctggtgtgtggcat 108
||||||||||||||||||||||||||||||||||||
Sbjct: 79 actatacaacttactactttccctggtgtgtggcat 114
>26672_cfa-mir-98:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 16 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagataact 75
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataact 60
Query: 76 atacaacttactactttccc 95
||||||||||||||||||||
Sbjct: 61 atacaacttactactttccc 80
>33955_ssc-mir-98:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 13 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagata 72
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagata 60
Query: 73 actatacaacttactacttt 92
||||||||||||||||||||
Sbjct: 61 actatacaacttactacttt 80
>27500_age-mir-98:mirbase
Length = 80
Score = 143 bits (72), Expect = 3e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagataac 74
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
Query: 75 tatacaacttactactttcc 94
||||||||||||||||||||
Sbjct: 61 tatacaacttactactttcc 80
>27701_mml-mir-98:mirbase
Length = 80
Score = 143 bits (72), Expect = 3e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagataac 74
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
Query: 75 tatacaacttactactttcc 94
||||||||||||||||||||
Sbjct: 61 tatacaacttactactttcc 80
>28291_ggo-mir-98:mirbase
Length = 80
Score = 143 bits (72), Expect = 3e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagataac 74
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
Query: 75 tatacaacttactactttcc 94
||||||||||||||||||||
Sbjct: 61 tatacaacttactactttcc 80
>30078_ppa-mir-98:mirbase
Length = 80
Score = 143 bits (72), Expect = 3e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagataac 74
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
Query: 75 tatacaacttactactttcc 94
||||||||||||||||||||
Sbjct: 61 tatacaacttactactttcc 80
>30801_ppy-mir-98:mirbase
Length = 80
Score = 143 bits (72), Expect = 3e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagataac 74
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgtggggtagggatattaggccccaattagaagataac 60
Query: 75 tatacaacttactactttcc 94
||||||||||||||||||||
Sbjct: 61 tatacaacttactactttcc 80
>31469_oan-mir-98:mirbase
Length = 149
Score = 101 bits (51), Expect = 1e-22
Identities = 91/102 (89%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 6 catgctggggtgaggtagtaagttgtattgttgtggggtagggatt--ttaggccccaat 63
||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 21 catgctgggatgaggtagtaagttgtattgttgtggggtagggatttcttttgccccaat 80
Query: 64 aagaagataactatacaacttactactttccctggtgtgtgg 105
|| ||||||||||||| ||||||||||||| ||||||||
Sbjct: 81 tag-cgataactatacaatttactactttccccagtgtgtgg 121
>27321_mdo-let-7b:mirbase
Length = 88
Score = 61.9 bits (31), Expect = 9e-11
Identities = 73/86 (84%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 12 ggggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagat 71
|||||||||||||| ||||| | ||| |||||| |||||| |||||||| |||||||
Sbjct: 4 ggggtgaggtagtaggttgtgtggtttcagggtagtgatttt--gccccaatcagaagat 61
Query: 72 aactatacaacttactactttccctg 97
||||||||||| |||| | |||||||
Sbjct: 62 aactatacaacctactgccttccctg 87
>25753_xtr-mir-98:mirbase
Length = 108
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 tgaggtagtaagttgtattgttgtgggg 43
||||||||||||||||||||||||||||
Sbjct: 17 tgaggtagtaagttgtattgttgtgggg 44
>26934_eca-let-7f:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| |||||||||||| |||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtagtgatttta 45
>27323_mdo-let-7f-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| |||||||||||| |||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtagtgatttta 45
>27636_mml-let-7f-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| |||||||||||| |||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtagtgatttta 45
>28346_hsa-let-7f-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| |||||||||||| |||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtagtgatttta 45
>30133_ptr-let-7f-1:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| |||||||||||| |||||||
Sbjct: 5 gtgaggtagtagattgtatagttgtggggtagtgatttta 44
>30738_ppy-let-7f-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| |||||||||||| |||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtagtgatttta 45
>31759_mmu-let-7f-1:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| |||||||||||| |||||||
Sbjct: 7 gtgaggtagtagattgtatagttgtggggtagtgatttta 46
>32645_rno-let-7f-1:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| |||||||||||| |||||||
Sbjct: 7 gtgaggtagtagattgtatagttgtggggtagtgatttta 46
>33101_rno-mir-3596d:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| |||||||||||| |||||||
Sbjct: 87 gtgaggtagtagattgtatagttgtggggtagtgatttta 48
>33115_bta-let-7f-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| |||||||||||| |||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtggggtagtgatttta 45
>34680_tni-let-7h:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tgctggggtgaggtagtaagttgtattgttgt 39
||||| |||||||||||||||||| |||||||
Sbjct: 10 tgctgtggtgaggtagtaagttgtgttgttgt 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 agataactatacaacttact 87
||||||||||||||||||||
Sbjct: 72 agataactatacaacttact 91
>25871_gga-let-7b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 68/82 (82%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 16 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagataact 75
|||||||||| ||||| | ||| |||||| |||||| |||||||| || ||||||||
Sbjct: 6 tgaggtagtaggttgtgtggtttcagggtagtgatttt--gccccaatcaggagataact 63
Query: 76 atacaacttactactttccctg 97
||||||| |||| | |||||||
Sbjct: 64 atacaacctactgccttccctg 85
>26379_tgu-let-7b:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 68/82 (82%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 16 tgaggtagtaagttgtattgttgtggggtagggattttaggccccaataagaagataact 75
|||||||||| ||||| | ||| |||||| |||||| |||||||| || ||||||||
Sbjct: 11 tgaggtagtaggttgtgtggtttcagggtagtgatttt--gccccaatcaggagataact 68
Query: 76 atacaacttactactttccctg 97
||||||| |||| | |||||||
Sbjct: 69 atacaacctactgccttccctg 90
>26610_cfa-let-7f:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 16 tgaggtagtaagttgtattgttgtggggtagggatttta 54
|||||||||| |||||| |||||||||||| |||||||
Sbjct: 1 tgaggtagtagattgtatagttgtggggtagtgatttta 39
>34181_dre-let-7h:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 ggtgaggtagtaagttgtattgttgt 39
|||||||||||||||||| |||||||
Sbjct: 17 ggtgaggtagtaagttgtgttgttgt 42
>34532_fru-let-7h:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 ggtgaggtagtaagttgtattgttgt 39
|||||||||||||||||| |||||||
Sbjct: 4 ggtgaggtagtaagttgtgttgttgt 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 agataactatacaacttact 87
||||||||||||||||||||
Sbjct: 57 agataactatacaacttact 76
>27632_mml-let-7b:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 65 agaagataactatacaacttactactttccctg 97
|||||||||||||||||| |||| | |||||||
Sbjct: 51 agaagataactatacaacctactgccttccctg 83
>30129_ptr-let-7b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 65 agaagataactatacaacttactactttccctg 97
|||||||||||||||||| |||| | |||||||
Sbjct: 50 agaagataactatacaacctactgccttccctg 82
>30734_ppy-let-7b:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 65 agaagataactatacaacttactactttccctg 97
|||||||||||||||||| |||| | |||||||
Sbjct: 51 agaagataactatacaacctactgccttccctg 83
>31410_oan-let-7b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 gccccaataagaagataactataca 80
|||||||| ||||||||||||||||
Sbjct: 43 gccccaatcagaagataactataca 67
>25680_xtr-let-7e-2:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 tggggtgaggtagtaagttgtattgttgtggg 42
||||||||||||||| ||||| | ||||||||
Sbjct: 7 tggggtgaggtagtaggttgtttagttgtggg 38
>28342_hsa-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 66 gaagataactatacaacttactactttccctg 97
||||||||||||||||| |||| | |||||||
Sbjct: 52 gaagataactatacaacctactgccttccctg 83
>31754_mmu-let-7b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 66 gaagataactatacaacttactactttccctg 97
||||||||||||||||| |||| | |||||||
Sbjct: 53 gaagataactatacaacctactgccttccctg 84
>31756_mmu-let-7c-2:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 tggggtgaggtagtaagttgtattgttgtggg 42
||||||||||||||| ||||||| ||| ||||
Sbjct: 9 tggggtgaggtagtaggttgtatggttttggg 40
>32640_rno-let-7b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 66 gaagataactatacaacttactactttccctg 97
||||||||||||||||| |||| | |||||||
Sbjct: 53 gaagataactatacaacctactgccttccctg 84
>32642_rno-let-7c-2:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 tggggtgaggtagtaagttgtattgttgtggg 42
||||||||||||||| ||||||| ||| ||||
Sbjct: 9 tggggtgaggtagtaggttgtatggttttggg 40
>34167_dre-let-7a-3:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 agataactatacaacttact 87
||||||||||||||||||||
Sbjct: 62 agataactatacaacttact 81
>34178_dre-let-7f:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 15 gtgaggtagtaagttgtattgttgtggggtagggatttta 54
||||||||||| |||||| ||||| |||||| |||||||
Sbjct: 19 gtgaggtagtagattgtatagttgtagggtagtgatttta 58
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 agataactatacaacttact 87
||||||||||||||||||||
Sbjct: 48 agataactatacaacttact 67
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 agataactatacaacttact 87
||||||||||||||||||||
Sbjct: 56 agataactatacaacttact 75
