miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31835_mmu-mir-106b:mirbase
Length = 82
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>27712_mml-mir-106b:mirbase
Length = 82
Score = 147 bits (74), Expect = 1e-36
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cctgctggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>28206_mne-mir-106b:mirbase
Length = 82
Score = 147 bits (74), Expect = 1e-36
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cctgctggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>27505_age-mir-106b:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>27614_sla-mir-106b:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>28298_ggo-mir-106b:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>28424_hsa-mir-106b:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>30085_ppa-mir-106b:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>30205_ptr-mir-106b:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>30812_ppy-mir-106b:mirbase
Length = 82
Score = 139 bits (70), Expect = 3e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>27567_lla-mir-106b:mirbase
Length = 81
Score = 123 bits (62), Expect = 2e-29
Identities = 78/82 (95%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtg-tcctctccgtgctaccgcactgt 59
Query: 61 gggtacttgctgctccagcagg 82
||||||||||||||||||||||
Sbjct: 60 gggtacttgctgctccagcagg 81
>33195_bta-mir-106b:mirbase
Length = 80
Score = 109 bits (55), Expect = 3e-25
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
Query: 61 gggtacttgctgctccagcagg 82
|||||||||||||||| |||||
Sbjct: 59 gggtacttgctgctccggcagg 80
>27003_eca-mir-106b:mirbase
Length = 59
Score = 101 bits (51), Expect = 7e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 12 taaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgtgggtacttgc 70
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 taaagtgctgacagtgcagatagtggtcctctccatgctaccgcactgtgggtacttgc 59
>26683_cfa-mir-106b:mirbase
Length = 59
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/61 (93%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 12 taaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgtgggtacttgct 71
||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct: 1 taaagtgctgacagtgcagatagcggtc--ctccgtgctaccgcactgtgggtacttgct 58
Query: 72 g 72
|
Sbjct: 59 g 59
