miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32721_rno-mir-125a:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tgccggcctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgccggcctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtga 60
Query: 61 ggttcttgggagcctggcgcctggc 85
|||||||||||||||||||||||||
Sbjct: 61 ggttcttgggagcctggcgcctggc 85
>33201_bta-mir-125a:mirbase
Length = 86
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 tgccggcctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtga 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgccggcctctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtga 60
Query: 61 ggttcttgggagcctggcg 79
|||||||||||||||||||
Sbjct: 61 ggttcttgggagcctggcg 79
>27717_mml-mir-125a:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 8 ctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 67
Query: 68 gggagcctggcgcctggc 85
|||||||||||| |||||
Sbjct: 68 gggagcctggcgtctggc 85
>27718_mml-mir-125a:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 8 ctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 67
Query: 68 gggagcctggcgcctggc 85
|||||||||||| |||||
Sbjct: 68 gggagcctggcgtctggc 85
>31841_mmu-mir-125a:mirbase
Length = 68
Score = 135 bits (68), Expect = 6e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 10 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 60
Query: 70 gagcctgg 77
||||||||
Sbjct: 61 gagcctgg 68
>31842_mmu-mir-125a:mirbase
Length = 68
Score = 135 bits (68), Expect = 6e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 10 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 60
Query: 70 gagcctgg 77
||||||||
Sbjct: 61 gagcctgg 68
>33970_ssc-mir-125a:mirbase
Length = 80
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 5 ggcctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggtt 64
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ggcctctgagtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggtt 60
Query: 65 cttgggagcctggcg 79
|||||||||||||||
Sbjct: 61 cttgggagcctggcg 75
>28430_hsa-mir-125a:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 8 ctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 67
Query: 68 gggagcctggcgcctggc 85
|||||||||||| |||||
Sbjct: 68 gggagcctggcgtctggc 85
>28431_hsa-mir-125a:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 8 ctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 67
Query: 68 gggagcctggcgcctggc 85
|||||||||||| |||||
Sbjct: 68 gggagcctggcgtctggc 85
>30817_ppy-mir-125a:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 8 ctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 67
Query: 68 gggagcctggcgcctggc 85
|||||||||||| |||||
Sbjct: 68 gggagcctggcgtctggc 85
>30818_ppy-mir-125a:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 8 ctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 67
Query: 68 gggagcctggcgcctggc 85
|||||||||||| |||||
Sbjct: 68 gggagcctggcgtctggc 85
>27009_eca-mir-125a:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 10 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 69
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgg 60
Query: 70 gagcctgg 77
||||||||
Sbjct: 61 gagcctgg 68
>27010_eca-mir-125a:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 10 ctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgg 69
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgg 60
Query: 70 gagcctgg 77
||||||||
Sbjct: 61 gagcctgg 68
>30209_ptr-mir-125a:mirbase
Length = 85
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 8 ctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7 ctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 66
Query: 68 gggagcctgg 77
||||||||||
Sbjct: 67 gggagcctgg 76
>26689_cfa-mir-125a:mirbase
Length = 60
Score = 111 bits (56), Expect = 8e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 15 tccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagcc 74
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagcc 60
>34278_dre-mir-125a-2:mirbase
Length = 107
Score = 61.9 bits (31), Expect = 7e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 tctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttg 68
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 23 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 81
Query: 69 gga 71
|||
Sbjct: 82 gga 84
>34735_tni-mir-125a:mirbase
Length = 63
Score = 52.0 bits (26), Expect = 6e-08
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttggga 71
||||||||||||||| ||||||||| |||| | ||||||||||||||| |||||||
Sbjct: 5 gtccctgagaccctt-aacctgtgataacgtgaaaggtcacaggtgaggtccttggga 61
>34588_fru-mir-125a:mirbase
Length = 66
Score = 44.1 bits (22), Expect = 2e-05
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttggga 71
||||||||||||||| ||||||||| || | | ||||||||||||||| |||||||
Sbjct: 8 gtccctgagaccctt-aacctgtgatgatatgaaaggtcacaggtgaggtccttggga 64
>25764_xtr-mir-125a:mirbase
Length = 62
Score = 42.1 bits (21), Expect = 6e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttct 66
||||||||||||| |||||||||||||| | | |||||||||||||||||
Sbjct: 1 gtccctgagaccc-ttaacctgtgaggaagacatatgtcacaggtgaggttct 52
>34277_dre-mir-125a-1:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgagg 40
||||||||||||| |||||||||||||
Sbjct: 13 gtccctgagaccc-ttaacctgtgagg 38
