miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32004_mmu-mir-338:mirbase
Length = 98
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 80
Query: 61 tgaaga 66
||||||
Sbjct: 81 tgaaga 86
>32005_mmu-mir-338:mirbase
Length = 98
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 80
Query: 61 tgaaga 66
||||||
Sbjct: 81 tgaaga 86
>32498_mmu-mir-3065:mirbase
Length = 87
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 17
Query: 61 tgaaga 66
||||||
Sbjct: 16 tgaaga 11
>33022_rno-mir-3065:mirbase
Length = 103
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 24
Query: 61 tgaaga 66
||||||
Sbjct: 23 tgaaga 18
>33023_rno-mir-3065:mirbase
Length = 103
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tccccaacaatatcctggtgctgagtgggtgcacagtgactccagcatcagtgattttgt 24
Query: 61 tgaaga 66
||||||
Sbjct: 23 tgaaga 18
>27850_mml-mir-338:mirbase
Length = 67
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgggtgcacag-tgactccagcatcagtgattttgttg 62
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttgttg 63
Query: 63 aaga 66
||||
Sbjct: 64 aaga 67
>27851_mml-mir-338:mirbase
Length = 67
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgggtgcacag-tgactccagcatcagtgattttgttg 62
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttgttg 63
Query: 63 aaga 66
||||
Sbjct: 64 aaga 67
>33326_bta-mir-338:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tccccaacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttg 59
||||||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 14 tccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttg 73
Query: 60 ttgaaga 66
|||||||
Sbjct: 74 ttgaaga 80
>34061_ssc-mir-338:mirbase
Length = 79
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tccccaacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttg 59
||||||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 7 tccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttg 66
Query: 60 ttgaaga 66
|||||||
Sbjct: 67 ttgaaga 73
>27442_mdo-mir-338:mirbase
Length = 89
Score = 67.9 bits (34), Expect = 8e-13
Identities = 62/69 (89%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 1 tccccaacaatatcctggtgctgagtgggtg-caca--gtgactccagcatcagtgattt 57
||||||||||||||||| ||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 9 tccccaacaatatcctgatgctgagtgagcggcacatggagactccagcatcagtgattt 68
Query: 58 tgttgaaga 66
|||||||||
Sbjct: 69 tgttgaaga 77
>28587_hsa-mir-338:mirbase
Length = 67
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 62
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
Query: 63 aaga 66
||||
Sbjct: 64 aaga 67
>28588_hsa-mir-338:mirbase
Length = 67
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 62
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
Query: 63 aaga 66
||||
Sbjct: 64 aaga 67
>29228_hsa-mir-3065:mirbase
Length = 79
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 4 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 62
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 70 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 11
Query: 63 aaga 66
||||
Sbjct: 10 aaga 7
>29229_hsa-mir-3065:mirbase
Length = 79
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 4 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 62
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 70 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 11
Query: 63 aaga 66
||||
Sbjct: 10 aaga 7
>30334_ptr-mir-338:mirbase
Length = 66
Score = 61.9 bits (31), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 62
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
Query: 63 aag 65
|||
Sbjct: 64 aag 66
>30955_ppy-mir-338:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 actccagcatcagtgattttgttgaaga 66
||||||||||||||||||||||||||||
Sbjct: 40 actccagcatcagtgattttgttgaaga 67
>30956_ppy-mir-338:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 39 actccagcatcagtgattttgttgaaga 66
||||||||||||||||||||||||||||
Sbjct: 40 actccagcatcagtgattttgttgaaga 67
>26805_cfa-mir-338:mirbase
Length = 59
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 6 aacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttga 63
|||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct: 1 aacaatatcctggtgctgagtgatgacacatgcaactccagcatcagtgattttgttga 59
>27131_eca-mir-338:mirbase
Length = 59
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 5 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 62
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>27132_eca-mir-338:mirbase
Length = 59
Score = 54.0 bits (27), Expect = 1e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 5 caacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttgttg 62
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>34389_dre-mir-338-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 actccagcatcagtgattttgttg 62
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34390_dre-mir-338-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 actccagcatcagtgattttgttg 62
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34391_dre-mir-338-3:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 actccagcatcagtgattttgttg 62
||||||||||||||||||||||||
Sbjct: 69 actccagcatcagtgattttgttg 92
>34392_dre-mir-338-4:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 actccagcatcagtgattttgttg 62
||||||||||||||||||||||||
Sbjct: 69 actccagcatcagtgattttgttg 92
>34649_fru-mir-338:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 actccagcatcagtgattttgttg 62
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34797_tni-mir-338:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 actccagcatcagtgattttgttg 62
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>25847_xtr-mir-338-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 47 ctccagcatcagtgattttgttg 69
>25848_xtr-mir-338-2:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 38 ctccagcatcagtgattttgttg 60
>26523_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
>26524_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ctccagcatcagtgattttgttg 62
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
