miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32857_rno-mir-339:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 acggggtggacaccgtccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acggggtggacaccgtccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
Query: 61 gacgacagagccagagtccacccctgcactgcccaa 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacgacagagccagagtccacccctgcactgcccaa 96
>32006_mmu-mir-339:mirbase
Length = 96
Score = 133 bits (67), Expect = 3e-32
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 1 acggggtggacaccgtccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
Query: 61 gacgacagagccagagtccacccctgcactg 91
| |||||||||| | ||||||||||||||||
Sbjct: 61 ggcgacagagccggtgtccacccctgcactg 91
>32007_mmu-mir-339:mirbase
Length = 96
Score = 133 bits (67), Expect = 3e-32
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 1 acggggtggacaccgtccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
Query: 61 gacgacagagccagagtccacccctgcactg 91
| |||||||||| | ||||||||||||||||
Sbjct: 61 ggcgacagagccggtgtccacccctgcactg 91
>30335_ptr-mir-339:mirbase
Length = 93
Score = 109 bits (55), Expect = 4e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagccag 74
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 15 tccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacagagccag 73
>27852_mml-mir-339:mirbase
Length = 94
Score = 105 bits (53), Expect = 6e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15 tccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacagagcc 71
>27853_mml-mir-339:mirbase
Length = 94
Score = 105 bits (53), Expect = 6e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15 tccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacagagcc 71
>28589_hsa-mir-339:mirbase
Length = 94
Score = 105 bits (53), Expect = 6e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15 tccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacagagcc 71
>28590_hsa-mir-339:mirbase
Length = 94
Score = 105 bits (53), Expect = 6e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15 tccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacagagcc 71
>30957_ppy-mir-339:mirbase
Length = 96
Score = 83.8 bits (42), Expect = 2e-17
Identities = 52/54 (96%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcc-tcgacgacag 68
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 15 tccctgtcctccaggagctcacgtgtgcctgcctgtgagcgccttcgacgacag 68
>34062_ssc-mir-339:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 ccgtccctgtcctccaggagctcac 37
|||||||||||||||||||||||||
Sbjct: 8 ccgtccctgtcctccaggagctcac 32
>34063_ssc-mir-339:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 ccgtccctgtcctccaggagctcac 37
|||||||||||||||||||||||||
Sbjct: 8 ccgtccctgtcctccaggagctcac 32
>33327_bta-mir-339:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gtccctgtcctccaggagctcac 37
|||||||||||||||||||||||
Sbjct: 13 gtccctgtcctccaggagctcac 35
>34158_ssc-mir-4334:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gtccctgtcctccaggagctc 35
|||||||||||||||||||||
Sbjct: 40 gtccctgtcctccaggagctc 60
>34159_ssc-mir-4334:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gtccctgtcctccaggagctc 35
|||||||||||||||||||||
Sbjct: 40 gtccctgtcctccaggagctc 60
>33328_bta-mir-339b:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctc 35
||||||||||||||||||||
Sbjct: 1 tccctgtcctccaggagctc 20
