miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32860_rno-mir-340:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 cacttgtactcggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacttgtactcggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtggga 60
Query: 61 tccgtctcagttactttatagccatacctggtatctta 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccgtctcagttactttatagccatacctggtatctta 98
>32008_mmu-mir-340:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 4 ttgtactcggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 63
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
Query: 64 gtctcagttactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacctggtatctta 98
>32009_mmu-mir-340:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 4 ttgtactcggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 63
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
Query: 64 gtctcagttactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacctggtatctta 98
>33329_bta-mir-340:mirbase
Length = 95
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 12 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 68
Query: 72 tactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||
Sbjct: 69 tactttatagccatacctggtatctta 95
>28591_hsa-mir-340:mirbase
Length = 95
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 12 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 71
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9 ggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcagt 68
Query: 72 tactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||
Sbjct: 69 tactttatagccatacctggtatctta 95
>30958_ppy-mir-340:mirbase
Length = 95
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 12 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 71
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9 ggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcagt 68
Query: 72 tactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||
Sbjct: 69 tactttatagccatacctggtatctta 95
>30336_ptr-mir-340:mirbase
Length = 94
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 12 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 71
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9 ggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcagt 68
Query: 72 tactttatagccatacctggtatctt 97
||||||||||||||||||||||||||
Sbjct: 69 tactttatagccatacctggtatctt 94
>27854_mml-mir-340:mirbase
Length = 95
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 12 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 71
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 9 ggtgtgattataaagcaatgagactgattgtcatatgttgtttgtgggatccgtctcagt 68
Query: 72 tactttatagccatacctggtatctta 98
|||||||||||||||||||||||||||
Sbjct: 69 tactttatagccatacctggtatctta 95
>34064_ssc-mir-340:mirbase
Length = 80
Score = 141 bits (71), Expect = 1e-34
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 12 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 71
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6 ggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtctcagt 65
Query: 72 tactttatagccata 86
|||||||||||||||
Sbjct: 66 tactttatagccata 80
>26806_cfa-mir-340:mirbase
Length = 92
Score = 129 bits (65), Expect = 4e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 17 gattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagttactt 76
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 14 gattataaagcaatgagactgattgtcatgtgtcggttgtgggatccgtctcagttactt 73
Query: 77 tatagccatacctggta 93
||||||| | |||||||
Sbjct: 74 tatagccgtgcctggta 90
>27133_eca-mir-340:mirbase
Length = 67
Score = 121 bits (61), Expect = 1e-28
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 19 ttataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagttacttta 78
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3 ttataaagcaatgagactgattgtcatgtgtcgcttgtgggatccgtctcagttacttta 62
Query: 79 tagcc 83
|||||
Sbjct: 63 tagcc 67
>27134_eca-mir-340:mirbase
Length = 67
Score = 121 bits (61), Expect = 1e-28
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 19 ttataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagttacttta 78
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3 ttataaagcaatgagactgattgtcatgtgtcgcttgtgggatccgtctcagttacttta 62
Query: 79 tagcc 83
|||||
Sbjct: 63 tagcc 67
