miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32011_mmu-mir-342:mirbase
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcctgctga 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcctgctga 99
>32012_mmu-mir-342:mirbase
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcctgctga 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcctgctga 99
>32863_rno-mir-342:mirbase
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcctgctga 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcctgctga 99
>27855_mml-mir-342:mirbase
Length = 99
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 gaaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
>27856_mml-mir-342:mirbase
Length = 99
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 gaaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
>28592_hsa-mir-342:mirbase
Length = 99
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 gaaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
>28593_hsa-mir-342:mirbase
Length = 99
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 gaaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
>30959_ppy-mir-342:mirbase
Length = 99
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 gaaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
>30960_ppy-mir-342:mirbase
Length = 99
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 gaaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcct 94
>30337_ptr-mir-342:mirbase
Length = 98
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5 tgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctca 64
Query: 66 cacagaaatcgcacccgtcaccttggcct 94
|||||||||||||||||||||||||||||
Sbjct: 65 cacagaaatcgcacccgtcaccttggcct 93
>27135_eca-mir-342:mirbase
Length = 99
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgtctca 65
Query: 66 cacagaaatcgcacccgtcaccttggcc 93
||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcc 93
>27136_eca-mir-342:mirbase
Length = 99
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgtctca 65
Query: 66 cacagaaatcgcacccgtcaccttggcc 93
||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcc 93
>26807_cfa-mir-342:mirbase
Length = 63
Score = 101 bits (51), Expect = 9e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 21 gggtgctatctgtgattgagggacatggtcaatggaattgtctcacacagaaatcgcacc 80
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1 gggtgctatctgtgattgagggacatggcaaatagaattgtctcacacagaaatcgcacc 60
Query: 81 cgt 83
|||
Sbjct: 61 cgt 63
>34065_ssc-mir-342:mirbase
Length = 80
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 21 gggtgctatctgtgattgagggacatggtcaatggaattgtctcacacagaaatcgcacc 80
||||||||||||||| |||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 8 gggtgctatctgtgactgagggacatggcgcatagaactgtctcacacagaaatcgcacc 67
Query: 81 cgtcaccttggcc 93
|||||||||||||
Sbjct: 68 cgtcaccttggcc 80
>33330_bta-mir-342:mirbase
Length = 94
Score = 63.9 bits (32), Expect = 2e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 18 gaggggtgctatctgtgattgagggacatggtcaatggaattgtctcacacagaaatcgc 77
||||||||||||||||| |||||| ||| || |||| || |||||||||||||||||||
Sbjct: 19 gaggggtgctatctgtggttgagg-acacggcaaatgaaactgtctcacacagaaatcgc 77
Query: 78 accc 81
||||
Sbjct: 78 accc 81
