miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32865_rno-mir-344a-1:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 ctgcagccagagtttttaccagtcaggctcctggctagattccaggtaccaactggtacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcagccagagtttttaccagtcaggctcctggctagattccaggtaccaactggtacc 60
Query: 61 tgatctagccaaagcctgaccgtaagctgcaaaagaaa 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgatctagccaaagcctgaccgtaagctgcaaaagaaa 98
>32867_rno-mir-344a-2:mirbase
Length = 107
Score = 159 bits (80), Expect = 5e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 3 gcagccagagtttttaccagtcaggctcctggctagattccaggtaccaactggtacctg 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcagccagggtttttaccagtcaggctcctggctagattccaggtaccaactggtacctg 60
Query: 63 atctagccaaagcctgaccgtaagctgcaaaa 94
|||||||||||||||||| |||||||| ||||
Sbjct: 61 atctagccaaagcctgactgtaagctgtaaaa 92
>32015_mmu-mir-344-2:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 13 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaa 60
Query: 73 agcctgaccgtaagctgcaa 92
|||||||| |||||||||||
Sbjct: 61 agcctgactgtaagctgcaa 80
>32014_mmu-mir-344-1:mirbase
Length = 95
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 1 ctgcagccagagtttttaccagtcaggctcctggctagattccaggtaccaactggtacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctgcagccagggtttttaccagtcaggctcctggctagattccaggtaccagctggtacc 60
Query: 61 tgatctagccaaagcctgaccgtaagc 87
|||||||||||||||||||| ||||||
Sbjct: 61 tgatctagccaaagcctgactgtaagc 87
>32017_mmu-mir-344c:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 3e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 20 cagtcaggctcctggctagattccaggtaccaactggtacctgatctagccaaagcctga 79
|||||||||| ||||||||| | ||| || || |||||||||||||||| ||||||||||
Sbjct: 17 cagtcaggctgctggctagagtacagctatcagctggtacctgatctagtcaaagcctga 76
Query: 80 ccgtaagctgc 90
| |||| ||||
Sbjct: 77 cagtaaactgc 87
