miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32869_rno-mir-344b-1:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 agagacctgatcagtcaggctgctggttatattccaggacttctctggtcctggatataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagacctgatcagtcaggctgctggttatattccaggacttctctggtcctggatataa 60
Query: 61 ccaaagcccgactgttaaataaaagtaagaatgtgtct 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccaaagcccgactgttaaataaaagtaagaatgtgtct 98
>32870_rno-mir-344b-2:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
Query: 68 ccgactgttaa 78
|||||||||||
Sbjct: 61 ccgactgttaa 71
>32871_rno-mir-344b-2:mirbase
Length = 71
Score = 133 bits (67), Expect = 3e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
Query: 68 ccgactgttaa 78
|||||||||||
Sbjct: 61 ccgactgttaa 71
>32021_mmu-mir-344e:mirbase
Length = 66
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 12 cagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagcccga 71
|||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
Query: 72 ct 73
||
Sbjct: 61 ct 62
>32018_mmu-mir-344d-1:mirbase
Length = 69
Score = 75.8 bits (38), Expect = 5e-15
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 10 atcagtcaggctgctggttatattccaggacttctctggtcctggatataacca 63
||||||||||||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
>32020_mmu-mir-344d-3:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 5e-15
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 10 atcagtcaggctgctggttatattccaggacttctctggtcctggatataacca 63
|||||||||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct: 8 atcagtcaggctagtggttatactccaggacttatctggtcctggatataacca 61
>32019_mmu-mir-344d-2:mirbase
Length = 80
Score = 69.9 bits (35), Expect = 3e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 21 tgctggttatattccaggacttctctggtcctggatataacca 63
|||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 19 tgctggctatattccaggacttatctggtcctggatataacca 61
