miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32871_rno-mir-344b-2:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
Query: 61 ccgactgttaa 71
|||||||||||
Sbjct: 61 ccgactgttaa 71
>32868_rno-mir-344b-1:mirbase
Length = 98
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
Query: 61 ccgactgttaa 71
|||||||||||
Sbjct: 68 ccgactgttaa 78
>32869_rno-mir-344b-1:mirbase
Length = 98
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
Query: 61 ccgactgttaa 71
|||||||||||
Sbjct: 68 ccgactgttaa 78
>32021_mmu-mir-344e:mirbase
Length = 66
Score = 75.8 bits (38), Expect = 4e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 5 cagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagcccga 64
|||||||||| |||| ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 1 cagtcaggcttctggctatattccaggacttacctggtcctggatataaccaaagcctga 60
Query: 65 ct 66
||
Sbjct: 61 ct 62
>32018_mmu-mir-344d-1:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 9e-13
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 3 atcagtcaggctgctggttatattccaggacttctctggtcctgggtataacca 56
||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||
Sbjct: 1 atcagtcaggctgctggctatacaccaggacttatctggtcctggatataacca 54
>32020_mmu-mir-344d-3:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 9e-13
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 3 atcagtcaggctgctggttatattccaggacttctctggtcctgggtataacca 56
|||||||||||| |||||||| |||||||||| ||||||||||| ||||||||
Sbjct: 8 atcagtcaggctagtggttatactccaggacttatctggtcctggatataacca 61
>32019_mmu-mir-344d-2:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 5e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 14 tgctggttatattccaggacttctctggtcctgggtataacca 56
|||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 19 tgctggctatattccaggacttatctggtcctggatataacca 61
