miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32031_mmu-mir-361:mirbase
Length = 70
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 gaagcttatcagaatctccaggggtacttattatttgaaaagtcccccaggtgtgattct 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gaagcttatcagaatctccaggggtacttagtatttgaaaagtcccccaggtgtgattct 60
Query: 61 gattcgtttc 70
|||| |||||
Sbjct: 61 gatttgtttc 70
>33334_bta-mir-361:mirbase
Length = 71
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttattatttg-aaaagtcccccaggtgtgattctg 61
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattctg 62
Query: 62 att 64
|||
Sbjct: 63 att 65
>34068_ssc-mir-361:mirbase
Length = 80
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttattatttg-aaaagtcccccaggtgtgattctg 61
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattctg 62
Query: 62 att 64
|||
Sbjct: 63 att 65
>34069_ssc-mir-361:mirbase
Length = 80
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttattatttg-aaaagtcccccaggtgtgattctg 61
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattctg 62
Query: 62 att 64
|||
Sbjct: 63 att 65
>26811_cfa-mir-361:mirbase
Length = 63
Score = 87.7 bits (44), Expect = 9e-19
Identities = 57/60 (95%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 6 ttatcagaatctccaggggtacttattatttg-aaaagtcccccaggtgtgattctgatt 64
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 1 ttatcagaatctccaggggtacttaaaatttgaaaaagtcccccaggtgtgattctgatt 60
>27859_mml-mir-361:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtac-ttattattt-gaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatt 64
||||
Sbjct: 63 gatt 66
>27860_mml-mir-361:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtac-ttattattt-gaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatt 64
||||
Sbjct: 63 gatt 66
>28596_hsa-mir-361:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtac-ttattattt-gaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatt 64
||||
Sbjct: 63 gatt 66
>28597_hsa-mir-361:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtac-ttattattt-gaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatt 64
||||
Sbjct: 63 gatt 66
>30340_ptr-mir-361:mirbase
Length = 71
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtac-ttattattt-gaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatt 64
||||
Sbjct: 63 gatt 66
>30963_ppy-mir-361:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtac-ttattattt-gaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatt 64
||||
Sbjct: 63 gatt 66
>30964_ppy-mir-361:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtac-ttattattt-gaaaagtcccccaggtgtgattct 60
||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgattct 62
Query: 61 gatt 64
||||
Sbjct: 63 gatt 66
>27141_eca-mir-361:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 9e-16
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttatta-tttgaaaagtcccccaggtgtgattctg 61
|||||||||||||||||||||||||| || | ||| |||||||||||||| |||||||||
Sbjct: 3 agcttatcagaatctccaggggtactgataattttaaaaagtcccccaggcgtgattctg 62
Query: 62 att 64
|||
Sbjct: 63 att 65
>27142_eca-mir-361:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 9e-16
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttatta-tttgaaaagtcccccaggtgtgattctg 61
|||||||||||||||||||||||||| || | ||| |||||||||||||| |||||||||
Sbjct: 3 agcttatcagaatctccaggggtactgataattttaaaaagtcccccaggcgtgattctg 62
Query: 62 att 64
|||
Sbjct: 63 att 65
