miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32042_mmu-mir-374:mirbase
Length = 95
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 13 ctcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatcat 72
Query: 61 tgtccgag 68
||||||||
Sbjct: 73 tgtccgag 80
Score = 52.0 bits (26), Expect = 5e-08
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 12 ataatacaacctgctaagtgttctagcacttagcacgttgtattat 57
|||||||||||||||||||| | | ||||||||| ||||||||||
Sbjct: 69 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 24
>27877_mml-mir-374b:mirbase
Length = 72
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct: 2 ctcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatcat 61
Query: 61 tgtccg 66
||||||
Sbjct: 62 tgtccg 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 12 ataatacaacctgctaagtgttctagcacttagcacgttgtattat 57
|||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 58 ataatacaacctgctaagtgctaggacacttagcaggttgtattat 13
>28614_hsa-mir-374b:mirbase
Length = 72
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct: 2 ctcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatcat 61
Query: 61 tgtccg 66
||||||
Sbjct: 62 tgtccg 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 12 ataatacaacctgctaagtgttctagcacttagcacgttgtattat 57
|||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 58 ataatacaacctgctaagtgctaggacacttagcaggttgtattat 13
>28615_hsa-mir-374c:mirbase
Length = 70
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Minus
Query: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct: 69 ctcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatcat 10
Query: 61 tgtccg 66
||||||
Sbjct: 9 tgtccg 4
Score = 44.1 bits (22), Expect = 1e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 ataatacaacctgctaagtgttctagcacttagcacgttgtattat 57
|||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 13 ataatacaacctgctaagtgctaggacacttagcaggttgtattat 58
>30351_ptr-mir-374b:mirbase
Length = 71
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct: 2 ctcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatcat 61
Query: 61 tgtccg 66
||||||
Sbjct: 62 tgtccg 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 12 ataatacaacctgctaagtgttctagcacttagcacgttgtattat 57
|||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 58 ataatacaacctgctaagtgctaggacacttagcaggttgtattat 13
>27155_eca-mir-374b:mirbase
Length = 72
Score = 99.6 bits (50), Expect = 2e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
|||||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||
Sbjct: 2 ctcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcat 61
Query: 61 tgtccg 66
||||||
Sbjct: 62 tgtccg 67
>33346_bta-mir-374b:mirbase
Length = 95
Score = 99.6 bits (50), Expect = 2e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
|||||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||
Sbjct: 13 ctcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcat 72
Query: 61 tgtccg 66
||||||
Sbjct: 73 tgtccg 78
>34077_ssc-mir-374b:mirbase
Length = 80
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 2 tcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattatt 61
||||||||||||||||||||||||||||||| |||||||||| || |||||||||| |||
Sbjct: 1 tcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 60
Query: 62 gtccg 66
|||||
Sbjct: 61 gtccg 65
>34078_ssc-mir-374b:mirbase
Length = 80
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 2 tcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattatt 61
||||||||||||||||||||||||||||||| |||||||||| || |||||||||| |||
Sbjct: 1 tcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 60
Query: 62 gtccg 66
|||||
Sbjct: 61 gtccg 65
>32043_mmu-mir-374c:mirbase
Length = 49
Score = 87.7 bits (44), Expect = 9e-19
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 10 atataatacaacctgctaagtgttctagcacttagcacgttgtattat 57
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 49 atataatacaacctgctaagtgttctagcacttagcaggttgtattat 2
Score = 52.0 bits (26), Expect = 5e-08
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 12 ataatacaacctgctaagtgttctagcacttagcacgttgtattat 57
|||||||||||||||||||| | | ||||||||| ||||||||||
Sbjct: 2 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 47
>26821_cfa-mir-374b:mirbase
Length = 52
Score = 71.9 bits (36), Expect = 5e-14
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 10 atataatacaacctgctaagtgttctagcacttagcacgttgtattat 57
||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 1 atataatacaacctgctaagtgtcctagcacttatcaggttgtattat 48
>26820_cfa-mir-374a:mirbase
Length = 52
Score = 58.0 bits (29), Expect = 8e-10
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 11 tataatacaacctgctaagtgttctagcacttagcacgttgtatt 55
|||||||||||||| |||||||| ||||||||| || ||||||||
Sbjct: 2 tataatacaacctgataagtgttgtagcacttaccaggttgtatt 46
>27154_eca-mir-374a:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 5e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 tataatacaacctgctaagtgttctagcacttagcacgttgtattattattgtc 64
|||||||||||||| |||||||| |||||||| || |||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtc 66
Score = 40.1 bits (20), Expect = 2e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 14 aatacaacctgctaagtgttctagcacttagcacgttgtattat 57
||||||||||| |||||| | || |||||| || ||||||||||
Sbjct: 57 aatacaacctgataagtgctgtaacacttatcaggttgtattat 14
>28613_hsa-mir-374a:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 5e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 tataatacaacctgctaagtgttctagcacttagcacgttgtattattattgtc 64
|||||||||||||| |||||||| ||||||||| || ||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtc 66
>30350_ptr-mir-374a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 5e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 tataatacaacctgctaagtgttctagcacttagcacgttgtattattattgtc 64
|||||||||||||| |||||||| ||||||||| || ||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtc 66
>30978_ppy-mir-374a:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 5e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 tataatacaacctgctaagtgttctagcacttagcacgttgtattattattgtc 64
|||||||||||||| |||||||| ||||||||| || ||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttgtagcacttatcagattgtattgtaattgtc 66
>33345_bta-mir-374a:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 5e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 tataatacaacctgctaagtgttctagcacttagcacgttgtattattattgtc 64
|||||||||||||| |||||||| |||||||| || |||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtc 66
Score = 40.1 bits (20), Expect = 2e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 14 aatacaacctgctaagtgttctagcacttagcacgttgtattat 57
||||||||||| |||||| | || |||||| || ||||||||||
Sbjct: 57 aatacaacctgataagtgctgtaacacttatcaggttgtattat 14
>34076_ssc-mir-374a:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 5e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 tataatacaacctgctaagtgttctagcacttagcacgttgtattattattgtc 64
|||||||||||||| |||||||| |||||||| || |||||||| | ||||||
Sbjct: 11 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtc 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 14 aatacaacctgctaagtgttctagcacttagcacgttgtattat 57
||||||||||| |||||| | || |||||| || ||||||||||
Sbjct: 55 aatacaacctgataagtgctgtaacacttatcaggttgtattat 12
>27876_mml-mir-374a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 11 tataatacaacctgctaagtgttctagcacttagcacgttgtattattattgtc 64
|||||||||||||| |||||||| |||||||| || ||||||| | ||||||
Sbjct: 13 tataatacaacctgataagtgttacagcacttatcagattgtattgtaattgtc 66
