miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26822_cfa-mir-375:mirbase
Length = 70
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 5 gccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgt 60
Query: 65 gaggcagggg 74
||||||||||
Sbjct: 61 gaggcagggg 70
>27878_mml-mir-375:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 6 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 60
Query: 66 aggc 69
||||
Sbjct: 61 aggc 64
>28616_hsa-mir-375:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 6 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 60
Query: 66 aggc 69
||||
Sbjct: 61 aggc 64
>30979_ppy-mir-375:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 6 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 60
Query: 66 aggc 69
||||
Sbjct: 61 aggc 64
>32044_mmu-mir-375:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 6 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 60
Query: 66 aggc 69
||||
Sbjct: 61 aggc 64
>33347_bta-mir-375:mirbase
Length = 64
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 6 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 60
Query: 66 aggc 69
||||
Sbjct: 61 aggc 64
>30352_ptr-mir-375:mirbase
Length = 63
Score = 125 bits (63), Expect = 5e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 6 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtg 60
Query: 66 agg 68
|||
Sbjct: 61 agg 63
>27447_mdo-mir-375:mirbase
Length = 63
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 7 cccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtga 66
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccgcgccgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtga 60
Query: 67 ggc 69
|||
Sbjct: 61 ggc 63
>26528_tgu-mir-375:mirbase
Length = 72
Score = 61.9 bits (31), Expect = 6e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 34 gacctgagcgttttgttcgttcggctcgcgtgaggcagg 72
||||||| ||||||||||||||||||||||| |||||||
Sbjct: 30 gacctgaacgttttgttcgttcggctcgcgttaggcagg 68
>26024_gga-mir-375:mirbase
Length = 65
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 34 gacctgagcgttttgttcgttcggctcgcgtgaggc 69
||||||| ||||||||||||||||||||||| ||||
Sbjct: 30 gacctgaacgttttgttcgttcggctcgcgttaggc 65
>25544_pma-mir-375b:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 gcgttttgttcgttcggctcgcgt 64
||||||||||||||||||||||||
Sbjct: 55 gcgttttgttcgttcggctcgcgt 78
>24704_bfl-mir-375:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 cgttttgttcgttcggctcgcgt 64
|||||||||||||||||||||||
Sbjct: 58 cgttttgttcgttcggctcgcgt 80
>25853_xtr-mir-375:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 cgttttgttcgttcggctcgcgt 64
|||||||||||||||||||||||
Sbjct: 38 cgttttgttcgttcggctcgcgt 60
>38887_lgi-mir-375:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gttttgttcgttcggctcgcgt 64
||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgt 80
>34398_dre-mir-375-1:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gttttgttcgttcggctcgcgt 64
||||||||||||||||||||||
Sbjct: 47 gttttgttcgttcggctcgcgt 68
>34399_dre-mir-375-2:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gttttgttcgttcggctcgcgt 64
||||||||||||||||||||||
Sbjct: 50 gttttgttcgttcggctcgcgt 71
>34651_fru-mir-375:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gttttgttcgttcggctcgcgt 64
||||||||||||||||||||||
Sbjct: 47 gttttgttcgttcggctcgcgt 68
>34799_tni-mir-375:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gttttgttcgttcggctcgcgt 64
||||||||||||||||||||||
Sbjct: 47 gttttgttcgttcggctcgcgt 68
>34837_spu-mir-375:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gttttgttcgttcggctcgcgt 64
||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgt 80
>25543_pma-mir-375a:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 tttgttcgttcggctcgcgt 64
||||||||||||||||||||
Sbjct: 59 tttgttcgttcggctcgcgt 78
>24855_cin-mir-375:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 46 ttgttcgttcggctcgcgt 64
|||||||||||||||||||
Sbjct: 65 ttgttcgttcggctcgcgt 83
>24856_cin-mir-375:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 46 ttgttcgttcggctcgcgt 64
|||||||||||||||||||
Sbjct: 65 ttgttcgttcggctcgcgt 83
>34898_sko-mir-375:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 45 tttgttcgttcggctcgcg 63
|||||||||||||||||||
Sbjct: 54 tttgttcgttcggctcgcg 72
>34988_isc-mir-375:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gttttgttcgttcggctcg 61
|||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcg 77
